RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 XKR9Q5GH70 373 aa25.39■■□□□ 1.66
SFSWAP-204ENST00000535399 HAUS3Q68CZ6 603 aa25.39■■□□□ 1.66
SFSWAP-204ENST00000535399 PIGOQ8TEQ8 1089 aa25.39■■□□□ 1.66
SFSWAP-204ENST00000535399 MAP7D2Q96T17 732 aa25.39■■□□□ 1.66
SFSWAP-204ENST00000535399 IFIH1Q9BYX4 1025 aaKnown RBP25.39■■□□□ 1.66
SFSWAP-204ENST00000535399 AKT3Q9Y243 479 aa25.39■■□□□ 1.66
SFSWAP-204ENST00000535399 CLIC4Q9Y696 253 aa25.39■■□□□ 1.66
SFSWAP-204ENST00000535399 SLC4A7Q9Y6M7 1214 aa25.39■■□□□ 1.66
SFSWAP-204ENST00000535399 SQORQ9Y6N5 450 aa25.39■■□□□ 1.66
SFSWAP-204ENST00000535399 LAMA2P24043 3122 aaKnown RBP25.39■■□□□ 1.65
SFSWAP-204ENST00000535399 HSFX4A0A1B0GTS1 333 aaPredicted RBP25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 HSFX3A0A1B0GWH4 333 aaPredicted RBP25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 PP2D1A8MPX8 630 aa25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 XRCC6P12956 609 aaKnown RBP eCLIP25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 PDIA4P13667 645 aaKnown RBP25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 RFC5P40937 340 aa25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 RARRES1P49788 294 aa25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 IKBKEQ14164 716 aa25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 ECM1Q16610 540 aa25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 KIZQ2M2Z5 673 aa25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 POTEGQ6S5H5 508 aa25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 TSHZ1Q6ZSZ6 1077 aa25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 PPP1R16BQ96T49 567 aa25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 JPH2Q9BR39 696 aaPredicted RBP25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 ADAMTS10Q9H324 1103 aa25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 STK24Q9Y6E0 443 aa25.38■■□□□ 1.65
SFSWAP-204ENST00000535399 GRXCR1A8MXD5 290 aa25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 MUTP22033 750 aa25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 CCT6AP40227 531 aaKnown RBP25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 CRYBB1P53674 252 aaPredicted RBP25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 WDR5P61964 334 aaKnown RBP25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 PKP1Q13835 747 aa25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 PTPAQ15257 358 aa25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 USP38Q8NB14 1042 aa25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 TMEM40Q8WWA1 233 aa25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 SLC7A3Q8WY07 619 aa25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 APBB2Q92870 758 aa25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 MMTAG2Q9BU76 263 aaKnown RBP25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 GINS2Q9Y248 185 aa25.37■■□□□ 1.65
SFSWAP-204ENST00000535399 VWA3AA6NCI4 1184 aa25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 EFCAB14O75071 495 aa25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 CDC25AP30304 524 aa25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 CD52P31358 61 aa25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 POLGP54098 1239 aaPredicted RBP25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 NLRP11P59045 1033 aaKnown RBP25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 EXOC8Q8IYI6 725 aa25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 ZNF710Q8N1W2 664 aa25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 SNX29Q8TEQ0 813 aa25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 NACC1Q96RE7 527 aa25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 OSMRQ99650 979 aa25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 SUCLA2Q9P2R7 463 aaPredicted RBP25.36■■□□□ 1.65
SFSWAP-204ENST00000535399 ZSCAN22P10073 491 aaPredicted RBP25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 ATP2A2P16615 1042 aaKnown RBP25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 DNM2P50570 870 aa25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 GPC3P51654 580 aa25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 DEFB103AP81534 67 aa25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 EMC2Q15006 297 aa25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 FOXD4L5Q5VV16 416 aaPredicted RBP25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 KRT79Q5XKE5 535 aa25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 PHOSPHO2Q8TCD6 241 aa25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 FOXD4L4Q8WXT5 416 aaPredicted RBP25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 USP28Q96RU2 1077 aa25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 XPNPEP1Q9NQW7 623 aa25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 DBR1Q9UK59 544 aaKnown RBP25.35■■□□□ 1.65
SFSWAP-204ENST00000535399 BECN1Q14457 450 aa25.34■■□□□ 1.65
SFSWAP-204ENST00000535399 LIN28BQ6ZN17 250 aaKnown RBP eCLIP25.34■■□□□ 1.65
SFSWAP-204ENST00000535399 TMEM143Q96AN5 459 aa25.34■■□□□ 1.65
SFSWAP-204ENST00000535399 ZNF668Q96K58 619 aaPredicted RBP25.34■■□□□ 1.65
SFSWAP-204ENST00000535399 SLC9A7Q96T83 725 aa25.34■■□□□ 1.65
SFSWAP-204ENST00000535399 BMP2KQ9NSY1 1161 aaPredicted RBP25.34■■□□□ 1.65
SFSWAP-204ENST00000535399 PADI3Q9ULW8 664 aa25.34■■□□□ 1.65
SFSWAP-204ENST00000535399 NOC2LQ9Y3T9 749 aaKnown RBP25.34■■□□□ 1.65
SFSWAP-204ENST00000535399 EVPLQ92817 2033 aa25.34■■□□□ 1.65
SFSWAP-204ENST00000535399 SIP14410 1827 aa25.33■■□□□ 1.65
SFSWAP-204ENST00000535399 GAS2O43903 313 aaKnown RBP25.33■■□□□ 1.65
SFSWAP-204ENST00000535399 KCNJ6P48051 423 aa25.33■■□□□ 1.65
SFSWAP-204ENST00000535399 GRIN1Q05586 938 aa25.33■■□□□ 1.65
SFSWAP-204ENST00000535399 ERVK-5Q9HDB9 667 aa25.33■■□□□ 1.65
SFSWAP-204ENST00000535399 KIAA1024Q9UPX6 916 aa25.33■■□□□ 1.65
SFSWAP-204ENST00000535399 LOC101059915A0A1B0GWI6 518 aaPredicted RBP25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 DGAT1O75907 488 aa25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 F13A1P00488 732 aa25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 PBX2P40425 430 aa25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 CDC42EP1Q00587 391 aa25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 PAK2Q13177 524 aa25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 HYIQ5T013 277 aa25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 GPR153Q6NV75 609 aa25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 FAM228AQ86W67 206 aa25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 AK8Q96MA6 479 aa25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 CCDC43Q96MW1 224 aaKnown RBP25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 MTRQ99707 1265 aa25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 PBX4Q9BYU1 374 aa25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 DDX19AQ9NUU7 478 aaKnown RBP25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 MORC2Q9Y6X9 1032 aaPredicted RBP25.32■■□□□ 1.64
SFSWAP-204ENST00000535399 RPS6KA5O75582 802 aa25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 EIF4BP23588 611 aaKnown RBP25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 RABGGTBP53611 331 aa25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 CEBPZQ03701 1054 aaKnown RBP25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 RHPN2Q8IUC4 686 aa25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 KSR1Q8IVT5 923 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms