RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 CXCL10P02778 98 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 THPOP40225 353 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 MAGEA10P43363 369 aaPredicted RBP16.14■□□□□ 0.17
CPSF1-206ENST00000531480 MBTPS1Q14703 1052 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 EFCAB12Q6NXP0 572 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 USP49Q70CQ1 688 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 KCNK18Q7Z418 384 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 RSPH3Q86UC2 560 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 CABP7Q86V35 215 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 TMEM199Q8N511 208 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 RETREG2Q8NC44 543 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 DNAJB3Q8WWF6 145 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 CLIC6Q96NY7 704 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 JPH2Q9BR39 696 aaPredicted RBP16.14■□□□□ 0.17
CPSF1-206ENST00000531480 SH2D3AQ9BRG2 576 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 XPNPEP1Q9NQW7 623 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 DDX19AQ9NUU7 478 aaKnown RBP16.14■□□□□ 0.17
CPSF1-206ENST00000531480 SQORQ9Y6N5 450 aa16.14■□□□□ 0.17
CPSF1-206ENST00000531480 CUTAO60888 179 aa16.13■□□□□ 0.17
CPSF1-206ENST00000531480 DGAT1O75907 488 aa16.13■□□□□ 0.17
CPSF1-206ENST00000531480 EYA4O95677 639 aa16.13■□□□□ 0.17
CPSF1-206ENST00000531480 CHRNA1P02708 482 aa16.13■□□□□ 0.17
CPSF1-206ENST00000531480 UBA7P41226 1012 aa16.13■□□□□ 0.17
CPSF1-206ENST00000531480 FOXD4L6Q3SYB3 417 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-206ENST00000531480 XKR9Q5GH70 373 aa16.13■□□□□ 0.17
CPSF1-206ENST00000531480 FOXD4L3Q6VB84 417 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-206ENST00000531480 LEO1Q8WVC0 666 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-206ENST00000531480 SLC7A3Q8WY07 619 aa16.13■□□□□ 0.17
CPSF1-206ENST00000531480 SYMPKQ92797 1274 aaKnown RBP16.13■□□□□ 0.17
CPSF1-206ENST00000531480 EPSTI1Q96J88 318 aa16.13■□□□□ 0.17
CPSF1-206ENST00000531480 CHAMP1Q96JM3 812 aa16.13■□□□□ 0.17
CPSF1-206ENST00000531480 SCAND2PQ9GZW5 306 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-206ENST00000531480 CHMP5Q9NZZ3 219 aa16.13■□□□□ 0.17
CPSF1-206ENST00000531480 PCDHA7Q9UN72 937 aa16.13■□□□□ 0.17
CPSF1-206ENST00000531480 RSPH10B2B2RC85 870 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 NBNO60934 754 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 GPR32O75388 356 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 PFKMP08237 780 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 RSPH10BP0C881 870 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 CSF2RAP15509 400 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 TMOD1P28289 359 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 CLCN3P51790 818 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 CCL23P55773 120 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 MRPS6P82932 125 aaKnown RBP16.12■□□□□ 0.17
CPSF1-206ENST00000531480 FPGSQ05932 587 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 PPIGQ13427 754 aaKnown RBP eCLIP16.12■□□□□ 0.179e-11■■■□□ 17.1
CPSF1-206ENST00000531480 DRP2Q13474 957 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 EMC2Q15006 297 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 IER5Q5VY09 327 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 C16orf59Q7L2K0 433 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 LRRC15Q8TF66 581 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 SCLYQ96I15 445 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 IL23AQ9NPF7 189 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 BLOC1S4Q9NUP1 217 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 DNM3Q9UQ16 869 aa16.12■□□□□ 0.17
CPSF1-206ENST00000531480 A0A087WWV3 80 aa16.11■□□□□ 0.17
CPSF1-206ENST00000531480 E9PMD0 336 aa16.11■□□□□ 0.17
CPSF1-206ENST00000531480 POLGP54098 1239 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-206ENST00000531480 EPHB4P54760 987 aa16.11■□□□□ 0.17
CPSF1-206ENST00000531480 CDC42EP1Q00587 391 aa16.11■□□□□ 0.17
CPSF1-206ENST00000531480 MDM2Q00987 491 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-206ENST00000531480 KARSQ15046 597 aaKnown RBP16.11■□□□□ 0.17
CPSF1-206ENST00000531480 SPECC1Q5M775 1068 aa16.11■□□□□ 0.17
CPSF1-206ENST00000531480 SHC4Q6S5L8 630 aa16.11■□□□□ 0.17
CPSF1-206ENST00000531480 FAM43BQ6ZT52 329 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-206ENST00000531480 LRRC71Q8N4P6 559 aa16.11■□□□□ 0.17
CPSF1-206ENST00000531480 METTL13Q8N6R0 699 aa16.11■□□□□ 0.17
CPSF1-206ENST00000531480 CALML4Q96GE6 196 aa16.11■□□□□ 0.17
CPSF1-206ENST00000531480 LBHD1Q9BQE6 289 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-206ENST00000531480 CELF4Q9BZC1 486 aaKnown RBP16.11■□□□□ 0.17
CPSF1-206ENST00000531480 FAM49AQ9H0Q0 323 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-206ENST00000531480 BHMT2Q9H2M3 363 aa16.11■□□□□ 0.17
CPSF1-206ENST00000531480 ADAMTS10Q9H324 1103 aa16.11■□□□□ 0.17
CPSF1-206ENST00000531480 CYP11B2P19099 503 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 DNM2P50570 870 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 SLC12A3P55017 1021 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 NAALADL2Q58DX5 795 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 FBXO47Q5MNV8 452 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 ADALQ6DHV7 355 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 PADI6Q6TGC4 694 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 C1orf186Q6ZWK4 172 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 RPUSD2Q8IZ73 545 aaKnown RBP16.1■□□□□ 0.17
CPSF1-206ENST00000531480 SYT2Q8N9I0 419 aaPredicted RBP16.1■□□□□ 0.17
CPSF1-206ENST00000531480 MCPH1Q8NEM0 835 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 TCP11Q8WWU5 503 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 SPATA32Q96LK8 384 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 MAP7D2Q96T17 732 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 MTRQ99707 1265 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 OSBPL7Q9BZF2 842 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 SUGCTQ9HAC7 445 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 ATP6V0A4Q9HBG4 840 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 KCND2Q9NZV8 630 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 TRPV2Q9Y5S1 764 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 CDY2AQ9Y6F7 541 aa16.1■□□□□ 0.17
CPSF1-206ENST00000531480 MICAL3Q7RTP6 2002 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 A0A087X0B3 334 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 FAM237AA0A1B0GTK4 181 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 ARHGEF35A5YM69 484 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 VTNP04004 478 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 CTSHP09668 335 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms