RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	PPP2CB	P62714	309 aa		6.69	□□□□□ -1.34
CD44-223	ENST00000526553	PPP2CA	P67775	309 aa		6.69	□□□□□ -1.34
CD44-223	ENST00000526553	PHC1	P78364	1004 aa		6.69	□□□□□ -1.34
CD44-223	ENST00000526553	SMAD3	P84022	425 aa	Known RBP	6.69	□□□□□ -1.34
CD44-223	ENST00000526553	ZMAT1	Q5H9K5	638 aa		6.69	□□□□□ -1.34
CD44-223	ENST00000526553	TRIM68	Q6AZZ1	485 aa		6.69	□□□□□ -1.34
CD44-223	ENST00000526553	ARHGEF18	Q6ZSZ5	1173 aa		6.69	□□□□□ -1.34
CD44-223	ENST00000526553	C7orf31	Q8N865	590 aa		6.69	□□□□□ -1.34
CD44-223	ENST00000526553	GPR101	Q96P66	508 aa	Predicted RBP	6.69	□□□□□ -1.34
CD44-223	ENST00000526553	TUBGCP5	Q96RT8	1024 aa		6.69	□□□□□ -1.34
CD44-223	ENST00000526553	BDH2	Q9BUT1	245 aa		6.69	□□□□□ -1.34
CD44-223	ENST00000526553	CAAP1	Q9H8G2	361 aa		6.69	□□□□□ -1.34
CD44-223	ENST00000526553	PRKAB1	Q9Y478	270 aa		6.69	□□□□□ -1.34
CD44-223	ENST00000526553	B4GALT4	O60513	344 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	FKBP9	O95302	570 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	CNOT4	O95628	575 aa	Known RBP	6.68	□□□□□ -1.34
CD44-223	ENST00000526553	ITGB3	P05106	788 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	BPI	P17213	487 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	ZNF568	Q3ZCX4	644 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	PRAMEF9	Q5VWM5	478 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	FKBP9P1	Q75LS8	142 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	C11orf74	Q86VG3	221 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	CHAC2	Q8WUX2	184 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	RBM15	Q96T37	977 aa	Known RBP eCLIP	6.68	□□□□□ -1.34
CD44-223	ENST00000526553	SEC61A2	Q9H9S3	476 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	SPTLC3	Q9NUV7	552 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	USP36	Q9P275	1121 aa	Known RBP	6.68	□□□□□ -1.34
CD44-223	ENST00000526553	PTPN22	Q9Y2R2	807 aa		6.68	□□□□□ -1.34
CD44-223	ENST00000526553	KRTAP9-7	A8MTY7	169 aa		6.67	□□□□□ -1.34
CD44-223	ENST00000526553	CELA3B	P08861	270 aa		6.67	□□□□□ -1.34
CD44-223	ENST00000526553	VIL1	P09327	827 aa	Known RBP	6.67	□□□□□ -1.34
CD44-223	ENST00000526553	BCAR1	P56945	870 aa		6.67	□□□□□ -1.34
CD44-223	ENST00000526553	MYBPC3	Q14896	1274 aa		6.67	□□□□□ -1.34
CD44-223	ENST00000526553	SLFN13	Q68D06	897 aa		6.67	□□□□□ -1.34
CD44-223	ENST00000526553	LARP4	Q71RC2	724 aa	Known RBP eCLIP	6.67	□□□□□ -1.34
CD44-223	ENST00000526553	DDX46	Q7L014	1031 aa	Known RBP	6.67	□□□□□ -1.34
CD44-223	ENST00000526553	KANSL1	Q7Z3B3	1105 aa		6.67	□□□□□ -1.34
CD44-223	ENST00000526553	BCL6B	Q8N143	479 aa	Predicted RBP	6.67	□□□□□ -1.34
CD44-223	ENST00000526553	OR5AN1	Q8NGI8	311 aa		6.67	□□□□□ -1.34
CD44-223	ENST00000526553	RPGR	Q92834	1020 aa	Known RBP	6.67	□□□□□ -1.34
CD44-223	ENST00000526553	USP7	Q93009	1102 aa		6.67	□□□□□ -1.34
CD44-223	ENST00000526553	EMC7	Q9NPA0	242 aa		6.67	□□□□□ -1.34
CD44-223	ENST00000526553	KCMF1	Q9P0J7	381 aa		6.67	□□□□□ -1.34
CD44-223	ENST00000526553	CDC42EP3	Q9UKI2	254 aa		6.67	□□□□□ -1.34
CD44-223	ENST00000526553	LSP1	P33241	339 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553	RRAD	P55042	308 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553	NFYC	Q13952	458 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553	AGBL4	Q5VU57	503 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553	TIGD7	Q6NT04	549 aa	Predicted RBP	6.66	□□□□□ -1.34
CD44-223	ENST00000526553	KRT26	Q7Z3Y9	468 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553	RTKN2	Q8IZC4	609 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553	ZNF610	Q8N9Z0	462 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553	RTF1	Q92541	710 aa	Known RBP	6.66	□□□□□ -1.34
CD44-223	ENST00000526553	SSBP3	Q9BWW4	388 aa	Predicted RBP	6.66	□□□□□ -1.34
CD44-223	ENST00000526553	MEGF9	Q9H1U4	602 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553	IFT22	Q9H7X7	185 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553	PPP4R1L	Q9P1A2	415 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553	VWA7	Q9Y334	891 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553	ZNF536	O15090	1300 aa		6.66	□□□□□ -1.34
CD44-223	ENST00000526553		K7ESM1	405 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	MAFG	O15525	162 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	ZEB2	O60315	1214 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	PRPF6	O94906	941 aa	Known RBP	6.65	□□□□□ -1.34
CD44-223	ENST00000526553	MEOX1	P50221	254 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	PLP2	Q04941	152 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	ADCY2	Q08462	1091 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	NOLC1	Q14978	699 aa	Known RBP eCLIP	6.65	□□□□□ -1.34
CD44-223	ENST00000526553	PCOLCE	Q15113	449 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	TERF2	Q15554	542 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	DGKD	Q16760	1214 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	KIAA1841	Q6NSI8	718 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	GLB1L	Q6UWU2	654 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	BMP8A	Q7Z5Y6	402 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	TTC1	Q99614	292 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	MYL10	Q9BUA6	226 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	PITHD1	Q9GZP4	211 aa	Predicted RBP	6.65	□□□□□ -1.34
CD44-223	ENST00000526553	HAPLN2	Q9GZV7	340 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	KIAA1683	Q9H0B3	1180 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	MSL2	Q9HCI7	577 aa		6.65	□□□□□ -1.34
CD44-223	ENST00000526553	APOBEC2	Q9Y235	224 aa	Known RBP	6.65	□□□□□ -1.34
CD44-223	ENST00000526553	ARHGAP6	O43182	974 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	MRE11	P49959	708 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	STAT5B	P51692	787 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	SESN2	P58004	480 aa	Predicted RBP	6.64	□□□□□ -1.35
CD44-223	ENST00000526553	ATP13A4	Q4VNC1	1196 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	ESPNL	Q6ZVH7	1005 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	USP30	Q70CQ3	517 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	FILIP1	Q7Z7B0	1213 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	AFAP1L2	Q8N4X5	818 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	SLC5A5	Q92911	643 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	OR10A2	Q9H208	303 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	POFUT1	Q9H488	388 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	JADE2	Q9NQC1	790 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	SAE1	Q9UBE0	346 aa	Predicted RBP	6.64	□□□□□ -1.35
CD44-223	ENST00000526553	CADPS	Q9ULU8	1353 aa		6.64	□□□□□ -1.35
CD44-223	ENST00000526553	NPEPPSL1	A6NEC2	478 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553		B8ZZF3	427 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	STRN3	Q13033	797 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	DDB1	Q16531	1140 aa		6.63	□□□□□ -1.35
CD44-223	ENST00000526553	RNF151	Q2KHN1	245 aa		6.63	□□□□□ -1.35

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