RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ZNF720Q7Z2F6 126 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 ACER1Q8TDN7 264 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 KRT12Q99456 494 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 DAAM1Q9Y4D1 1078 aa23.18■■□□□ 1.3
VPS28-205ENST00000526204 KCNK3O14649 394 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 CHMP2AO43633 222 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 SHOX2O60902 331 aaPredicted RBP23.17■■□□□ 1.3
VPS28-205ENST00000526204 ZNF772Q68DY9 489 aaPredicted RBP23.17■■□□□ 1.3
VPS28-205ENST00000526204 EIF1ADQ8N9N8 165 aaKnown RBP23.17■■□□□ 1.3
VPS28-205ENST00000526204 ACTRT1Q8TDG2 376 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 FAM151AQ8WW52 585 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 BCAS3Q9H6U6 928 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 POLD4Q9HCU8 107 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 KIF13BQ9NQT8 1826 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 NPEPPSP55786 919 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 KIAA1755Q5JYT7 1200 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 CCDC174Q6PII3 467 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 FAM160B2Q86V87 743 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 FAM178BQ8IXR5 827 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 FRMD4BQ9Y2L6 1034 aa23.17■■□□□ 1.3
VPS28-205ENST00000526204 SPDYE2BA6NHP3 402 aa23.16■■□□□ 1.3
VPS28-205ENST00000526204 TCP10L2B9ZVM9 353 aa23.16■■□□□ 1.3
VPS28-205ENST00000526204 SPDYE6P0CI01 402 aa23.16■■□□□ 1.3
VPS28-205ENST00000526204 CARSP49589 748 aaKnown RBP23.16■■□□□ 1.3
VPS28-205ENST00000526204 SYCE1Q8N0S2 351 aa23.16■■□□□ 1.3
VPS28-205ENST00000526204 MREGQ8N565 214 aa23.16■■□□□ 1.3
VPS28-205ENST00000526204 TSEN2Q8NCE0 465 aaKnown RBP23.16■■□□□ 1.3
VPS28-205ENST00000526204 TPCN2Q8NHX9 752 aa23.16■■□□□ 1.3
VPS28-205ENST00000526204 WHAMMQ8TF30 809 aa23.16■■□□□ 1.3
VPS28-205ENST00000526204 ZNF577Q9BSK1 485 aa23.16■■□□□ 1.3
VPS28-205ENST00000526204 STK33Q9BYT3 514 aa23.16■■□□□ 1.3
VPS28-205ENST00000526204 ZBTB21Q9ULJ3 1066 aa23.16■■□□□ 1.3
VPS28-205ENST00000526204 SLX4Q8IY92 1834 aa23.16■■□□□ 1.3
VPS28-205ENST00000526204 PPIP5K2O43314 1243 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 PPP2R5AQ15172 486 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 ZC2HC1CQ53FD0 456 aaPredicted RBP23.15■■□□□ 1.3
VPS28-205ENST00000526204 CALR3Q96L12 384 aaKnown RBP23.15■■□□□ 1.3
VPS28-205ENST00000526204 FIZ1Q96SL8 496 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 TSPYL1Q9H0U9 437 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 DMAC2Q9NW81 257 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 NFU1Q9UMS0 254 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 YDJCA8MPS7 323 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 CCDC172P0C7W6 258 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 POLD1P28340 1107 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 CHRNA5P30532 468 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 FMO5P49326 533 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 SLFN11Q7Z7L1 901 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 IFT81Q8WYA0 676 aa23.15■■□□□ 1.3
VPS28-205ENST00000526204 AJAP1Q9UKB5 411 aaPredicted RBP23.15■■□□□ 1.3
VPS28-205ENST00000526204 DDX3XO00571 662 aaKnown RBP eCLIP23.14■■□□□ 1.36e-7■■□□□ 12.4
VPS28-205ENST00000526204 LMNB1P20700 586 aa23.14■■□□□ 1.3
VPS28-205ENST00000526204 GUCY2CP25092 1073 aa23.14■■□□□ 1.3
VPS28-205ENST00000526204 SOX5P35711 763 aa23.14■■□□□ 1.3
VPS28-205ENST00000526204 NEK9Q8TD19 979 aa23.14■■□□□ 1.3
VPS28-205ENST00000526204 TEKT3Q9BXF9 490 aa23.14■■□□□ 1.3
VPS28-205ENST00000526204 VCPKMTQ9H867 229 aa23.14■■□□□ 1.3
VPS28-205ENST00000526204 AGPAT3Q9NRZ7 376 aa23.14■■□□□ 1.3
VPS28-205ENST00000526204 A6NNZ2 444 aa23.14■■□□□ 1.29
VPS28-205ENST00000526204 PPFIA4O75335 1185 aa23.14■■□□□ 1.29
VPS28-205ENST00000526204 TUBB8Q3ZCM7 444 aa23.14■■□□□ 1.29
VPS28-205ENST00000526204 ODR4Q5SWX8 454 aa23.14■■□□□ 1.29
VPS28-205ENST00000526204 SCFD2Q8WU76 684 aa23.14■■□□□ 1.29
VPS28-205ENST00000526204 RIT2Q99578 217 aa23.14■■□□□ 1.29
VPS28-205ENST00000526204 SUCLA2Q9P2R7 463 aaPredicted RBP23.14■■□□□ 1.29
VPS28-205ENST00000526204 F8VZ95 297 aa23.13■■□□□ 1.29
VPS28-205ENST00000526204 ZBTB39O15060 712 aa23.13■■□□□ 1.29
VPS28-205ENST00000526204 EVI5O60447 810 aa23.13■■□□□ 1.29
VPS28-205ENST00000526204 MYBPC2Q14324 1141 aa23.13■■□□□ 1.29
VPS28-205ENST00000526204 GJB7Q6PEY0 223 aa23.13■■□□□ 1.29
VPS28-205ENST00000526204 B3GNT9Q6UX72 402 aa23.13■■□□□ 1.29
VPS28-205ENST00000526204 PEX26Q7Z412 305 aa23.13■■□□□ 1.29
VPS28-205ENST00000526204 SLC9A9Q8IVB4 645 aa23.13■■□□□ 1.29
VPS28-205ENST00000526204 SLC30A5Q8TAD4 765 aa23.13■■□□□ 1.29
VPS28-205ENST00000526204 UNC45AQ9H3U1 944 aa23.13■■□□□ 1.29
VPS28-205ENST00000526204 ZNF70Q9UC06 446 aaPredicted RBP23.13■■□□□ 1.29
VPS28-205ENST00000526204 FEM1BQ9UK73 627 aa23.13■■□□□ 1.29
VPS28-205ENST00000526204 PGRMC1O00264 195 aaKnown RBP23.12■■□□□ 1.29
VPS28-205ENST00000526204 CEP104O60308 925 aa23.12■■□□□ 1.29
VPS28-205ENST00000526204 RNASE9P60153 205 aaKnown RBP23.12■■□□□ 1.29
VPS28-205ENST00000526204 DLGAP5Q15398 846 aa23.12■■□□□ 1.29
VPS28-205ENST00000526204 CFAP58Q5T655 872 aa23.12■■□□□ 1.29
VPS28-205ENST00000526204 IQCKQ8N0W5 287 aa23.12■■□□□ 1.29
VPS28-205ENST00000526204 U2AF1L4Q8WU68 220 aaKnown RBP23.12■■□□□ 1.29
VPS28-205ENST00000526204 CASKIN2Q8WXE0 1202 aa23.12■■□□□ 1.29
VPS28-205ENST00000526204 DEFB129Q9H1M3 183 aa23.12■■□□□ 1.29
VPS28-205ENST00000526204 IPO5O00410 1097 aaKnown RBP23.12■■□□□ 1.29
VPS28-205ENST00000526204 RAD51CO43502 376 aa23.12■■□□□ 1.29
VPS28-205ENST00000526204 RSBN1LQ6PCB5 846 aaPredicted RBP23.12■■□□□ 1.29
VPS28-205ENST00000526204 SLC30A10Q6XR72 485 aa23.12■■□□□ 1.29
VPS28-205ENST00000526204 SRLQ86TD4 932 aa23.12■■□□□ 1.29
VPS28-205ENST00000526204 ZIM3Q96PE6 472 aa23.12■■□□□ 1.29
VPS28-205ENST00000526204 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.12■■□□□ 1.294e-7■■■■□ 21.8
VPS28-205ENST00000526204 DNAJC12Q9UKB3 198 aa23.12■■□□□ 1.29
VPS28-205ENST00000526204 ESYT3A0FGR9 886 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 ARHGEF35A5YM69 484 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 CCDC188H7C350 402 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 TBC1D12O60347 775 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 ARP10275 920 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 UBXN2AP68543 259 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 GRIPAP1Q4V328 841 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms