RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 RFX6Q8HWS3 928 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 MIF4GDA9UHW6 222 aaKnown RBP14.88□□□□□ -0.03
SYNPO-205ENST00000522122 EIF3HO15372 352 aaKnown RBP eCLIP14.88□□□□□ -0.03
SYNPO-205ENST00000522122 TMEM179Q6ZVK1 233 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 CEP95Q96GE4 821 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 CDHR1Q96JP9 859 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 NFAT5O94916 1531 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 NR3C1P04150 777 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 FCER1AP12319 257 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 DNAJC24Q6P3W2 148 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 HACE1Q8IYU2 909 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 CCHCR1Q8TD31 782 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 PIGOQ8TEQ8 1089 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 TRIM9Q9C026 710 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 ZNF408Q9H9D4 720 aa14.88□□□□□ -0.03
SYNPO-205ENST00000522122 GOLGA8SH3BPF8 625 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 PPP1R18Q6NYC8 613 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 PDXDC2PQ6P474 469 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 USP17L15C9J2P7 530 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 USP17L13C9JLJ4 530 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 USP17L11C9JVI0 530 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 USP17L18D6R9N7 530 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 USP17L22D6RA61 530 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 USP17L17D6RBQ6 530 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 USP17L19D6RCP7 530 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 USP17L20D6RJB6 530 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 SART1O43290 800 aaKnown RBP14.87□□□□□ -0.03
SYNPO-205ENST00000522122 KRT1P04264 644 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 ABCD1P33897 745 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 USP17L24Q0WX57 530 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 USP17L6PQ6QN14 398 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 ATP6V1G3Q96LB4 118 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 AGPAT5Q9NUQ2 364 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 SNX24Q9Y343 169 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 LTN1O94822 1766 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 LUC7L3O95232 432 aaKnown RBP14.87□□□□□ -0.03
SYNPO-205ENST00000522122 MSH2P43246 934 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 TRIP13Q15645 432 aaPredicted RBP14.87□□□□□ -0.03
SYNPO-205ENST00000522122 FAM133BQ5BKY9 247 aaKnown RBP14.87□□□□□ -0.03
SYNPO-205ENST00000522122 PAPD7Q5XG87 772 aaKnown RBP14.87□□□□□ -0.03
SYNPO-205ENST00000522122 FAM160B2Q86V87 743 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 RPUSD2Q8IZ73 545 aaKnown RBP14.87□□□□□ -0.03
SYNPO-205ENST00000522122 PDE1BQ01064 536 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 FAM182BQ5T319 152 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 SCYL3Q8IZE3 742 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 CD209Q9NNX6 404 aa14.87□□□□□ -0.03
SYNPO-205ENST00000522122 EXOC1LA0A1B0GW35 172 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 A6NJR5 290 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 FER1L4A9Z1Z3 1794 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 M0QZ92 97 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 CORO7P57737 925 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 TFDP1Q14186 410 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 SBK1Q52WX2 424 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 LRRC31Q6UY01 552 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 NCAPG2Q86XI2 1143 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 FAM20AQ96MK3 541 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 INO80B-WBP1J3KQ70 363 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 RPSAP08865 295 aaKnown RBP14.86□□□□□ -0.03
SYNPO-205ENST00000522122 JPH2Q9BR39 696 aaPredicted RBP14.86□□□□□ -0.03
SYNPO-205ENST00000522122 INO80BQ9C086 356 aaPredicted RBP14.86□□□□□ -0.03
SYNPO-205ENST00000522122 GOLGA8IPA6NC78 632 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 GOLGA8JA6NMD2 632 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 LRRIQ3A6PVS8 624 aaPredicted RBP14.86□□□□□ -0.03
SYNPO-205ENST00000522122 TBC1D9BQ66K14 1250 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 NLRP14Q86W24 1093 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 DCAF4Q8WV16 495 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 FAM84BQ96KN1 310 aaPredicted RBP14.86□□□□□ -0.03
SYNPO-205ENST00000522122 INTS13Q9NVM9 706 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 TMEM260Q9NX78 707 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 NARFQ9UHQ1 456 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 POTEB3A0JP26 581 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 LRRD1A4D1F6 860 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 POTECB2RU33 542 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 KNOP1Q1ED39 458 aaKnown RBP14.86□□□□□ -0.03
SYNPO-205ENST00000522122 POTEBQ6S5H4 581 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 TRIM42Q8IWZ5 723 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 NME8Q8N427 588 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 ANKRD36BP1Q96IX9 119 aa14.86□□□□□ -0.03
SYNPO-205ENST00000522122 SYNGAP1Q96PV0 1343 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 MAP2K7O14733 419 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 MCF2LO15068 1137 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 RPS6KA2Q15349 733 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 NXNQ6DKJ4 435 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 ATRNO75882 1429 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 ACSL3O95573 720 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 SNAP25P60880 206 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 HERVK_113P62684 666 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 SEPT6Q14141 434 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 NUGGCQ68CJ6 796 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.85□□□□□ -0.033e-7■■■■■ 62.1
SYNPO-205ENST00000522122 TAF1DQ9H5J8 278 aaPredicted RBP14.85□□□□□ -0.03
SYNPO-205ENST00000522122 IFT122Q9HBG6 1241 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 ESYT3A0FGR9 886 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 PEX3P56589 373 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 TFAMQ00059 246 aaKnown RBP14.85□□□□□ -0.03
SYNPO-205ENST00000522122 STAG2Q8N3U4 1231 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 NSUN4Q96CB9 384 aaKnown RBP14.85□□□□□ -0.03
SYNPO-205ENST00000522122 MED10Q9BTT4 135 aa14.85□□□□□ -0.03
SYNPO-205ENST00000522122 FAM217BQ9NTX9 383 aaPredicted RBP14.85□□□□□ -0.03
SYNPO-205ENST00000522122 SEPT10Q9P0V9 454 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms