RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 KIAA1841Q6NSI8 718 aa9.46□□□□□ -0.9
LSM1-202ENST00000520286 NFXL1Q6ZNB6 911 aa9.46□□□□□ -0.9
LSM1-202ENST00000520286 PJA1Q8NG27 643 aa9.46□□□□□ -0.9
LSM1-202ENST00000520286 TAAR9Q96RI9 348 aa9.46□□□□□ -0.9
LSM1-202ENST00000520286 FOXB1Q99853 325 aa9.46□□□□□ -0.9
LSM1-202ENST00000520286 KCTD10Q9H3F6 313 aa9.46□□□□□ -0.9
LSM1-202ENST00000520286 SEMA6BQ9H3T3 888 aa9.46□□□□□ -0.9
LSM1-202ENST00000520286 TUBD1Q9UJT1 453 aa9.46□□□□□ -0.9
LSM1-202ENST00000520286 CTNND1O60716 968 aaKnown RBP9.45□□□□□ -0.9
LSM1-202ENST00000520286 NBPF7P0C2Y1 421 aaPredicted RBP9.45□□□□□ -0.9
LSM1-202ENST00000520286 SPINK2P20155 84 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 ERVFRD-1P60508 538 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 KIF23Q02241 960 aaPredicted RBP9.45□□□□□ -0.9
LSM1-202ENST00000520286 ALDH6A1Q02252 535 aaKnown RBP9.45□□□□□ -0.9
LSM1-202ENST00000520286 ROM1Q03395 351 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 ADCY2Q08462 1091 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 NR1I3Q14994 352 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 PLCL1Q15111 1095 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 MUM1Q2TAK8 710 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 CATIPQ7Z7H3 387 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 PPM1NQ8N819 430 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 PRDM12Q9H4Q4 367 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 MAN1C1Q9NR34 630 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 UCKL1Q9NWZ5 548 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 DTLQ9NZJ0 730 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 ARHGAP28Q9P2N2 729 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 DPP7Q9UHL4 492 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 ADAMTS6Q9UKP5 1117 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 NUMBLQ9Y6R0 609 aa9.45□□□□□ -0.9
LSM1-202ENST00000520286 NUDT19A8MXV4 375 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 POU2F2P09086 479 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 FURINP09958 794 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 SDHBP21912 280 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 SSTR4P31391 388 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 MC4RP32245 332 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 LGALS4P56470 323 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 UAP1L1Q3KQV9 507 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 COBLL1Q53SF7 1204 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 SLFN12LQ6IEE8 588 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 UNQ6494/PRO21346Q6UXR6 183 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 TTC17Q96AE7 1141 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 TSPAN17Q96FV3 270 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 TOE1Q96GM8 510 aaKnown RBP9.44□□□□□ -0.9
LSM1-202ENST00000520286 GTPBP4Q9BZE4 634 aaKnown RBP9.44□□□□□ -0.9
LSM1-202ENST00000520286 RNF38Q9H0F5 515 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 MBNL3Q9NUK0 354 aaKnown RBP9.44□□□□□ -0.9
LSM1-202ENST00000520286 USP25Q9UHP3 1055 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 TMPRSS11EQ9UL52 423 aa9.44□□□□□ -0.9
LSM1-202ENST00000520286 MPOP05164 745 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 CD97P48960 835 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 PRR5P85299 388 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 PICALMQ13492 652 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 TRIM25Q14258 630 aaKnown RBP9.43□□□□□ -0.9
LSM1-202ENST00000520286 GALEQ14376 348 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 ATAT1Q5SQI0 421 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 MBNL2Q5VZF2 373 aaKnown RBP9.43□□□□□ -0.9
LSM1-202ENST00000520286 CD276Q5ZPR3 534 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 IL31Q6EBC2 164 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 LILRA6Q6PI73 481 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 RPTNQ6XPR3 784 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 KANSL1Q7Z3B3 1105 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 THEMISQ8N1K5 641 aaPredicted RBP9.43□□□□□ -0.9
LSM1-202ENST00000520286 HPS3Q969F9 1004 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 IFT122Q9HBG6 1241 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 SERPINB13Q9UIV8 391 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 CTNND2Q9UQB3 1225 aa9.43□□□□□ -0.9
LSM1-202ENST00000520286 NFIBO00712 420 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 LDHAP00338 332 aaKnown RBP9.42□□□□□ -0.9
LSM1-202ENST00000520286 LRG1P02750 347 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 RNASE1P07998 156 aaKnown RBP9.42□□□□□ -0.9
LSM1-202ENST00000520286 PFKMP08237 780 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 PTGS1P23219 599 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 RGS3P49796 1198 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 CDK17Q00537 523 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 RAB3GAP1Q15042 981 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 FAM126BQ8IXS8 530 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 GRAMD1CQ8IYS0 662 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 ABHD4Q8TB40 342 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 TSPEARQ8WU66 669 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 RNF32Q9H0A6 362 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 FAM50BQ9Y247 325 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 YBX2Q9Y2T7 364 aaKnown RBP9.42□□□□□ -0.9
LSM1-202ENST00000520286 HCFC2Q9Y5Z7 792 aa9.42□□□□□ -0.9
LSM1-202ENST00000520286 MYPNQ86TC9 1320 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 KIAA1324LA8MWY0 1029 aaPredicted RBP9.41□□□□□ -0.9
LSM1-202ENST00000520286 MPIG6BO95866 241 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 IFIT2P09913 472 aaKnown RBP9.41□□□□□ -0.9
LSM1-202ENST00000520286 PHKG2P15735 406 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 NEK3P51956 506 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 SLC16A1P53985 500 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 SPIDRQ14159 915 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 SAFBQ15424 915 aaKnown RBP eCLIP9.41□□□□□ -0.9
LSM1-202ENST00000520286 MIB1Q86YT6 1006 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 LYSMD2Q8IV50 215 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 TP53INP2Q8IXH6 220 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 AGBL5Q8NDL9 886 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.41□□□□□ -0.9
LSM1-202ENST00000520286 CALML6Q8TD86 181 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 COA7Q96BR5 231 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 MAP3K14Q99558 947 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms