RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 CCT8L1PA6NM43 557 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 LPXNO60711 386 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 RFX1P22670 979 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 PMLP29590 882 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 TSPY1Q01534 308 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 ADCY1Q08828 1119 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 DMC1Q14565 340 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 IKBIPQ70UQ0 350 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 PASD1Q8IV76 773 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 MB21D1Q8N884 522 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 RDH13Q8NBN7 331 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 USP33Q8TEY7 942 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 FAM192AQ9GZU8 254 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 RUBCNLQ9H714 662 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 SLC39A2Q9NP94 309 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 HPS5Q9UPZ3 1129 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 CDH16O75309 829 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 PRDM1O75626 825 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 TAGAPQ8N103 731 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 NDEL1Q9GZM8 345 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 NDST4Q9H3R1 872 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 BIN2Q9UBW5 565 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 ADAM30Q9UKF2 790 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 MAN1B1Q9UKM7 699 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 MAP3K5Q99683 1374 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 WDR64B1ANS9 1081 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 ANKRD65E5RJM6 399 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 TSPAN9O75954 239 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 TRIM49P0CI25 452 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 TRIM49CP0CI26 452 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 GSPT1P15170 499 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 POLD1P28340 1107 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 SERPINB8P50452 374 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 TFDP1Q14186 410 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 MTHFD1LQ6UB35 978 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 HACD3Q9P035 362 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 CEP72Q9P209 647 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 G3BP2Q9UN86 482 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 MRPL11Q9Y3B7 192 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 STX7O15400 261 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 PSMA4P25789 261 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 CALML6Q8TD86 181 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 LRRC39Q96DD0 335 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 FAM227BQ96M60 508 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 CPSF3Q9UKF6 684 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 HMOX2P30519 316 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 PTGDRQ13258 359 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 ZNF827Q17R98 1081 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 ARL13BQ3SXY8 428 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 ARMC3Q5W041 872 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 ARL6IP4Q66PJ3 421 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 LONP2Q86WA8 852 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 LINC00301Q8NCQ3 95 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 CCNYQ8ND76 341 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 ZNF556Q9HAH1 456 aa11.95□□□□□ -0.5
LIMCH1-208ENST00000508501 TRIM24O15164 1050 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 SNX2O60749 519 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 XPAP23025 273 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 SLC7A5Q01650 507 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 CSTF3Q12996 717 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 TRIP10Q15642 601 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 CC2D2BQ6DHV5 1058 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 C11orf57Q6ZUT1 292 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 PLBD2Q8NHP8 589 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 TBC1D22AQ8WUA7 517 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 HNRNPLLQ8WVV9 542 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 MRPL1Q9BYD6 325 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 SLC40A1Q9NP59 571 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 RGL1Q9NZL6 768 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 SNX24Q9Y343 169 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 SP4Q02446 784 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 RTL3Q8N8U3 475 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 NRBP2Q9NSY0 501 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 TLR3O15455 904 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 PJA2O43164 708 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 DLGAP3O95886 979 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 SLC9A1P19634 815 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 DSG1Q02413 1049 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 ANKRD7Q92527 254 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 FAF2Q96CS3 445 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 MCRS1Q96EZ8 462 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 SNF8Q96H20 258 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 METTL22Q9BUU2 404 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 NOD2Q9HC29 1040 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 PCDHGB4Q9UN71 923 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 NOD1Q9Y239 953 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 ATP8B3O60423 1300 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 SPAG6O75602 509 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 SOX5P35711 763 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 SERPINB9P50453 376 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 KRT31Q15323 416 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 XAGE2Q96GT9 111 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 ANKRD36BP1Q96IX9 119 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 CHAMP1Q96JM3 812 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 ETAA1Q9NY74 926 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 BTBD7Q9P203 1132 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 AQRO60306 1485 aaKnown RBP eCLIP11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 MROH5Q6ZUA9 1318 aa11.94□□□□□ -0.5
LIMCH1-208ENST00000508501 PNMA8CA0A1B0GUJ8 204 aa11.93□□□□□ -0.5
LIMCH1-208ENST00000508501 ASNA1O43681 348 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms