RNA–Protein interactions for RNA: ENST00000504951.6

GYPB-204, Transcript of glycophorin B (MNS blood group), humanhuman

TSL 1 (best)

Gene GYPB, Length 632 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GYPB-204ENST00000504951 PCDHB7Q9Y5E2 793 aa6.95□□□□□ -1.3
GYPB-204ENST00000504951 PCDHA2Q9Y5H9 948 aa6.95□□□□□ -1.3
GYPB-204ENST00000504951 CDY2AQ9Y6F7 541 aa6.95□□□□□ -1.3
GYPB-204ENST00000504951 WDR87Q6ZQQ6 2873 aa6.95□□□□□ -1.3
GYPB-204ENST00000504951 CACNA1GO43497 2377 aa6.95□□□□□ -1.3
GYPB-204ENST00000504951 FANCMQ8IYD8 2048 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 SMIM35A0A1B0GVV1 85 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 C9IYK1 514 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 GCOM1H8Y6P7 765 aaPredicted RBP6.94□□□□□ -1.3
GYPB-204ENST00000504951 ZBTB5O15062 677 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 PI15O43692 258 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 POLR2MP0CAP2 368 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 MYCLP12524 364 aaPredicted RBP6.94□□□□□ -1.3
GYPB-204ENST00000504951 CD52P31358 61 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 SLC19A1P41440 591 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 MRPS9P82933 396 aaKnown RBP6.94□□□□□ -1.3
GYPB-204ENST00000504951 TBC1D8BQ0IIM8 1120 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 SEMA3FQ13275 785 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 BMS1Q14692 1282 aaKnown RBP6.94□□□□□ -1.3
GYPB-204ENST00000504951 ZNF528Q3MIS6 628 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 MFSD6Q6ZSS7 791 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 CYFIP1Q7L576 1253 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 IQCA1Q86XH1 822 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 TDRD5Q8NAT2 981 aaKnown RBP6.94□□□□□ -1.3
GYPB-204ENST00000504951 COLGALT1Q8NBJ5 622 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 SUMF1Q8NBK3 374 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 PNMA1Q8ND90 353 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 DNAJB3Q8WWF6 145 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 SEPT1Q8WYJ6 367 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 CDHR1Q96JP9 859 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 CELF4Q9BZC1 486 aaKnown RBP6.94□□□□□ -1.3
GYPB-204ENST00000504951 TMX1Q9H3N1 280 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 SMARCAD1Q9H4L7 1026 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 BCAS3Q9H6U6 928 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 NPDC1Q9NQX5 325 aaPredicted RBP6.94□□□□□ -1.3
GYPB-204ENST00000504951 TMEM260Q9NX78 707 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 LIMD1Q9UGP4 676 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 TUBE1Q9UJT0 475 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 PCDHA1Q9Y5I3 950 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 HCFC2Q9Y5Z7 792 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 CHD6Q8TD26 2715 aa6.94□□□□□ -1.3
GYPB-204ENST00000504951 KIAA1671Q9BY89 1806 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 C2orf71A6NGG8 1288 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 PIK3CDO00329 1044 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 HOXA2O43364 376 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 DGAT1O75907 488 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 C1RP00736 705 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 PARP1P09874 1014 aaKnown RBP6.93□□□□□ -1.3
GYPB-204ENST00000504951 MX1P20591 662 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 PRR20EP86478 221 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 PRR20CP86479 221 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 PRR20DP86480 221 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 PRR20BP86481 221 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 PRR20AP86496 221 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 RBM10P98175 930 aaKnown RBP6.93□□□□□ -1.3
GYPB-204ENST00000504951 KRT17Q04695 432 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 PPFIA1Q13136 1202 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 SMC1AQ14683 1233 aaKnown RBP6.93□□□□□ -1.3
GYPB-204ENST00000504951 GRIK4Q16099 956 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 KMT5BQ4FZB7 885 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 MCMDC2Q4G0Z9 681 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 PKDCCQ504Y2 493 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 PCNX4Q63HM2 1172 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 OTOP3Q7RTS5 596 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 TEX2Q8IWB9 1127 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 IL31RAQ8NI17 732 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 CYP2W1Q8TAV3 490 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 GPKOWQ92917 476 aaPredicted RBP eCLIP6.93□□□□□ -1.3
GYPB-204ENST00000504951 ACSF2Q96CM8 615 aaPredicted RBP6.93□□□□□ -1.3
GYPB-204ENST00000504951 GPRASP2Q96D09 838 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 FAM227BQ96M60 508 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 TMEM117Q9H0C3 514 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 RIOX1Q9H6W3 641 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 TYW1Q9NV66 732 aaKnown RBP6.93□□□□□ -1.3
GYPB-204ENST00000504951 TMEM161AQ9NX61 479 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 DLGAP2Q9P1A6 1054 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 STK39Q9UEW8 545 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 LRFN2Q9ULH4 789 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 TRPV2Q9Y5S1 764 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 FNDC1Q4ZHG4 1894 aaPredicted RBP6.93□□□□□ -1.3
GYPB-204ENST00000504951 PLXNA4Q9HCM2 1894 aa6.93□□□□□ -1.3
GYPB-204ENST00000504951 A0A0D9SFI3 127 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 GSTTP1A0A1W2PQM5 241 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 PALM3A6NDB9 673 aaPredicted RBP6.92□□□□□ -1.3
GYPB-204ENST00000504951 HIDE1A8MVS5 230 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 RNF223E7ERA6 249 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 M0QZ92 97 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 GPR182O15218 404 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 CLASP2O75122 1294 aaKnown RBP6.92□□□□□ -1.3
GYPB-204ENST00000504951 ADRB1P08588 477 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 GOLGA8HP0CJ92 632 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 SLC26A2P50443 739 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 POLGP54098 1239 aaPredicted RBP6.92□□□□□ -1.3
GYPB-204ENST00000504951 ATXN1P54253 815 aaKnown RBP6.92□□□□□ -1.3
GYPB-204ENST00000504951 PAK2Q13177 524 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 DSC3Q14574 896 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 NONOQ15233 471 aaKnown RBP eCLIP6.92□□□□□ -1.3
GYPB-204ENST00000504951 RSPO4Q2I0M5 234 aaPredicted RBP6.92□□□□□ -1.3
GYPB-204ENST00000504951 KCNT2Q6UVM3 1135 aa6.92□□□□□ -1.3
GYPB-204ENST00000504951 C15orf39Q6ZRI6 1047 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms