RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	EXOC8	Q8IYI6	725 aa		13.3	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CCDC155	Q8N6L0	562 aa		13.3	□□□□□ -0.28
PDLIM5-208	ENST00000504489	DHX38	Q92620	1227 aa	Known RBP	13.3	□□□□□ -0.28
PDLIM5-208	ENST00000504489	NOC4L	Q9BVI4	516 aa	Known RBP	13.3	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CCSER1	Q9C0I3	900 aa		13.3	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CSRNP2	Q9H175	543 aa		13.3	□□□□□ -0.28
PDLIM5-208	ENST00000504489	HIPK3	Q9H422	1215 aa		13.3	□□□□□ -0.28
PDLIM5-208	ENST00000504489	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.3	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CYP26B1	Q9NR63	512 aa		13.3	□□□□□ -0.28
PDLIM5-208	ENST00000504489	KDM3A	Q9Y4C1	1321 aa		13.3	□□□□□ -0.28
PDLIM5-208	ENST00000504489	TMEM150B	A6NC51	233 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CUTA	O60888	179 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CAND2	O75155	1236 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	C22orf31	O95567	290 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	RAG1	P15918	1043 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	NPEPPS	P55786	919 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	TBC1D8B	Q0IIM8	1120 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	XKR9	Q5GH70	373 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	PLA2G4F	Q68DD2	849 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	RUFY4	Q6ZNE9	571 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CABP7	Q86V35	215 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	PIGO	Q8TEQ8	1089 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	LEO1	Q8WVC0	666 aa	Predicted RBP	13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	WNT8B	Q93098	351 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CEP170P1	Q96L14	293 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CLIC6	Q96NY7	704 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	JPH2	Q9BR39	696 aa	Predicted RBP	13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	NT5C3A	Q9H0P0	336 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	DBR1	Q9UK59	544 aa	Known RBP	13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	KIAA1024	Q9UPX6	916 aa		13.29	□□□□□ -0.28
PDLIM5-208	ENST00000504489	IGKV6-21	A0A0C4DH24	114 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	MAF	O75444	373 aa	Predicted RBP	13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CKB	P12277	381 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	NCL	P19338	710 aa	Known RBP	13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	ITGB8	P26012	769 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	RFC5	P40937	340 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	RARRES1	P49788	294 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	GRB10	Q13322	594 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	RSPH3	Q86UC2	560 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	NME8	Q8N427	588 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	LINC01465	Q8N7H1	131 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	RETREG2	Q8NC44	543 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	ZBTB10	Q96DT7	871 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CALML4	Q96GE6	196 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	EPSTI1	Q96J88	318 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	CHAMP1	Q96JM3	812 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	PNMA5	Q96PV4	448 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	PPP1R12C	Q9BZL4	782 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	DHX33	Q9H6R0	707 aa	Known RBP	13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	DDX19A	Q9NUU7	478 aa	Known RBP	13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489	DNM3	Q9UQ16	869 aa		13.28	□□□□□ -0.28
PDLIM5-208	ENST00000504489		A0A087WWV3	80 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	GAS2	O43903	313 aa	Known RBP	13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SYN1	P17600	705 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TMOD1	P28289	359 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	THPO	P40225	353 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	ME1	P48163	572 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TMEM119	Q4V9L6	283 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	FAM26D	Q5JW98	314 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SPECC1	Q5M775	1068 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	LCE2D	Q5TA82	110 aa	Predicted RBP	13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	MFSD5	Q6N075	450 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	EFCAB12	Q6NXP0	572 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	USP49	Q70CQ1	688 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	KIAA0319L	Q8IZA0	1049 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	DNAJB3	Q8WWF6	145 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SYMPK	Q92797	1274 aa	Known RBP	13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CDK5RAP3	Q96JB5	506 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SPATA32	Q96LK8	384 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SH2D3A	Q9BRG2	576 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	WNT8A	Q9H1J5	351 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PCDHA7	Q9UN72	937 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	UMODL1	Q5DID0	1318 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PTPRS	Q13332	1948 aa		13.27	□□□□□ -0.29
PDLIM5-208	ENST00000504489	ARHGEF35	A5YM69	484 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489		H0YGN5	161 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	DGAT1	O75907	488 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PARN	O95453	639 aa	Known RBP	13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	EYA4	O95677	639 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	IQCF3	P0C7M6	154 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SELP	P16109	830 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CYP2C18	P33260	490 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TXLNA	P40222	546 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	POLG	P54098	1239 aa	Predicted RBP	13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	KARS	Q15046	597 aa	Known RBP	13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	ZRSR1	Q15695	479 aa	Known RBP	13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	ZNF618	Q5T7W0	954 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TRAF7	Q6Q0C0	670 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	LRRC8D	Q7L1W4	858 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	KCNK18	Q7Z418	384 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	ZNF710	Q8N1W2	664 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TMEM199	Q8N511	208 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	METTL13	Q8N6R0	699 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SLC7A3	Q8WY07	619 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	GBF1	Q92538	1859 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CCDC43	Q96MW1	224 aa	Known RBP	13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.26	□□□□□ -0.29

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