RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 FAM133AQ8N9E0 248 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 JDP2Q8WYK2 163 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 TBC1D5Q92609 795 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 SLC35C1Q96A29 364 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 L3MBTL3Q96JM7 780 aaPredicted RBP13.1□□□□□ -0.31
NUP54-202ENST00000502850 LXNQ9BS40 222 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 KIAA1683Q9H0B3 1180 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 UNC45AQ9H3U1 944 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 GCNT4Q9P109 453 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 TCEAL9Q9UHQ7 104 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 INTUQ9ULD6 942 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 PCDHGC5Q9Y5F6 944 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 MYH10P35580 1976 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 SMCHD1A6NHR9 2005 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 ZMYM2Q9UBW7 1377 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 A0A0U1RQG5 324 aaPredicted RBP13.1□□□□□ -0.31
NUP54-202ENST00000502850 CCDC66A2RUB6 948 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 FZD9O00144 591 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 P4HBP07237 508 aaKnown RBP13.1□□□□□ -0.31
NUP54-202ENST00000502850 TAL1P17542 331 aaPredicted RBP13.1□□□□□ -0.31
NUP54-202ENST00000502850 SNRPFP62306 86 aaKnown RBP13.1□□□□□ -0.31
NUP54-202ENST00000502850 ZYXQ15942 572 aaKnown RBP13.1□□□□□ -0.31
NUP54-202ENST00000502850 PCNX4Q63HM2 1172 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 ZNF720Q7Z2F6 126 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 MIER3Q7Z3K6 550 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 FAM71BQ8TC56 605 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 PIGOQ8TEQ8 1089 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 TMEM174Q8WUU8 243 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 IWS1Q96ST2 819 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 ZNF341Q9BYN7 854 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 TMEM206Q9H813 350 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 MYOZ2Q9NPC6 264 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 TBC1D22BQ9NU19 505 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 PGAP2Q9UHJ9 254 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 DBR1Q9UK59 544 aaKnown RBP13.1□□□□□ -0.31
NUP54-202ENST00000502850 ZBTB12Q9Y330 459 aaPredicted RBP13.1□□□□□ -0.31
NUP54-202ENST00000502850 CTDP1Q9Y5B0 961 aaPredicted RBP13.1□□□□□ -0.31
NUP54-202ENST00000502850 DOCK1Q14185 1865 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 ZNF541Q9H0D2 1346 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 WNT10BO00744 389 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 TGFB1I1O43294 461 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 N4BP1O75113 896 aaKnown RBP13.09□□□□□ -0.31
NUP54-202ENST00000502850 LYPLA2O95372 231 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 TFRCP02786 760 aaKnown RBP13.09□□□□□ -0.31
NUP54-202ENST00000502850 STAT1P42224 750 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 KIAA0753Q2KHM9 967 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 ODR4Q5SWX8 454 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 XRRA1Q6P2D8 792 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 SPATA4Q8NEY3 305 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 LMBR1Q8WVP7 490 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 HOOK2Q96ED9 719 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 CCDC43Q96MW1 224 aaKnown RBP13.09□□□□□ -0.31
NUP54-202ENST00000502850 PSD3Q9NYI0 1048 aa13.09□□□□□ -0.31
NUP54-202ENST00000502850 LARSQ9P2J5 1176 aaKnown RBP13.09□□□□□ -0.31
NUP54-202ENST00000502850 A0A0A6YYK5 440 aaPredicted RBP13.08□□□□□ -0.32
NUP54-202ENST00000502850 CTNND1O60716 968 aaKnown RBP13.08□□□□□ -0.32
NUP54-202ENST00000502850 CLSTN1O94985 981 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 ARP10275 920 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 TNFRSF8P28908 595 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 JAM2P57087 298 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 CXCL9Q07325 125 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 CETN1Q12798 172 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 TAF3Q5VWG9 929 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 CHADLQ6NUI6 762 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 MIGA2Q7L4E1 593 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 IRF2BP2Q7Z5L9 587 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 TAF4BQ92750 862 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 EXOC4Q96A65 974 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 BORCS6Q96GS4 357 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 DRC1Q96MC2 740 aa13.08□□□□□ -0.32
NUP54-202ENST00000502850 TAF1DQ9H5J8 278 aaPredicted RBP13.08□□□□□ -0.32
NUP54-202ENST00000502850 A0A087X0T9 212 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 ZNF185O15231 689 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 POLR3GO15318 223 aaPredicted RBP13.07□□□□□ -0.32
NUP54-202ENST00000502850 FAM228BP0C875 321 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 KRT13P13646 458 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 SLC9A1P19634 815 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 NMT1P30419 496 aaKnown RBP13.07□□□□□ -0.32
NUP54-202ENST00000502850 SFNP31947 248 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 AARSP49588 968 aaKnown RBP eCLIP13.07□□□□□ -0.32
NUP54-202ENST00000502850 JAK3P52333 1124 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 ZNF280AP59817 542 aaPredicted RBP13.07□□□□□ -0.32
NUP54-202ENST00000502850 ARID5AQ03989 594 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 C2orf54Q08AI8 447 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 DPY19L2P1Q6NXN4 242 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 NFRKBQ6P4R8 1299 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 SYCP3Q8IZU3 236 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 SYCE1Q8N0S2 351 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 GPC2Q8N158 579 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 GOLGA6L1Q8N7Z2 621 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 RDM1Q8NG50 284 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 KLRG1Q96E93 195 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 CALR3Q96L12 384 aaKnown RBP13.07□□□□□ -0.32
NUP54-202ENST00000502850 TLR10Q9BXR5 811 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 MAF1Q9H063 256 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 SLC38A10Q9HBR0 1119 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 PDE11AQ9HCR9 933 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 ST7Q9NRC1 585 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 AGPAT3Q9NRZ7 376 aa13.07□□□□□ -0.32
NUP54-202ENST00000502850 DMAC2Q9NW81 257 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms