RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 SFPQP23246 707 aaKnown RBP eCLIP9.31□□□□□ -0.92
SF3A1-210ENST00000498259 TCF7P36402 384 aaPredicted RBP9.31□□□□□ -0.92
SF3A1-210ENST00000498259 MAP2K2P36507 400 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 ACVR2BQ13705 512 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 NR1I3Q14994 352 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 NFIL3Q16649 462 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 LY6KQ17RY6 165 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 CCDC40Q4G0X9 1142 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 FAM102BQ5T8I3 360 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 UTP14CQ5TAP6 766 aaKnown RBP9.31□□□□□ -0.92
SF3A1-210ENST00000498259 CCDC62Q6P9F0 684 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 ANO5Q75V66 913 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 ZNF720Q7Z2F6 126 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 ZSCAN30Q86W11 494 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 FBXO16Q8IX29 292 aaPredicted RBP9.31□□□□□ -0.92
SF3A1-210ENST00000498259 SPC24Q8NBT2 197 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 RETREG2Q8NC44 543 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 CCDC112Q8NEF3 446 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 PPTC7Q8NI37 304 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 SCFD1Q8WVM8 642 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 SPIRE2Q8WWL2 714 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 ACCSQ96QU6 501 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 GPR20Q99678 358 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 APBA2Q99767 749 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 NTPCRQ9BSD7 190 aaKnown RBP9.31□□□□□ -0.92
SF3A1-210ENST00000498259 TUBGCP2Q9BSJ2 902 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 GBP3Q9H0R5 595 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 FRMD4BQ9Y2L6 1034 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 Q9Y3F1 56 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 PCDHA2Q9Y5H9 948 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 ASTN1O14525 1302 aa9.31□□□□□ -0.92
SF3A1-210ENST00000498259 NPHP3-ACAD11A0A0J9YXS1 232 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 A0A1W2PQC6 194 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 GSTTP1A0A1W2PQM5 241 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 RASSF10A6NK89 507 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 K7ENM7 598 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 KIAA0391O15091 583 aaKnown RBP9.3□□□□□ -0.92
SF3A1-210ENST00000498259 SLC16A3O15427 465 aaKnown RBP9.3□□□□□ -0.92
SF3A1-210ENST00000498259 MAGEB2O15479 319 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 CCP110O43303 1012 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 HBP1O60381 514 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 PEX10O60683 326 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 KPNA6O60684 536 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 LGR5O75473 907 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 GNRH1P01148 92 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 EPB41P11171 864 aaKnown RBP9.3□□□□□ -0.92
SF3A1-210ENST00000498259 ATP1A3P13637 1013 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 TMOD1P28289 359 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 APLP1P51693 650 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 CDC42EP1Q00587 391 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 SP2Q02086 613 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 TBC1D8BQ0IIM8 1120 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 STRN3Q13033 797 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 ADAM9Q13443 819 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 MXD4Q14582 209 aaPredicted RBP9.3□□□□□ -0.92
SF3A1-210ENST00000498259 DGKDQ16760 1214 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 DUSP28Q4G0W2 176 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 MORN1Q5T089 497 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 MFSD14CQ5VZR4 134 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 EPM2AIP1Q7L775 607 aaPredicted RBP9.3□□□□□ -0.92
SF3A1-210ENST00000498259 FRMD5Q7Z6J6 570 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 CCDC60Q8IWA6 550 aaPredicted RBP9.3□□□□□ -0.92
SF3A1-210ENST00000498259 ZNF397Q8NF99 534 aaPredicted RBP9.3□□□□□ -0.92
SF3A1-210ENST00000498259 ATP8B4Q8TF62 1192 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 TMEM174Q8WUU8 243 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 MKNK1Q9BUB5 465 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 NOC4LQ9BVI4 516 aaKnown RBP9.3□□□□□ -0.92
SF3A1-210ENST00000498259 HSD3B7Q9H2F3 369 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 SEMA6BQ9H3T3 888 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 RTN4Q9NQC3 1192 aaKnown RBP9.3□□□□□ -0.92
SF3A1-210ENST00000498259 KMT5AQ9NQR1 393 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 TBC1D7Q9P0N9 293 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 WRAP73Q9P2S5 460 aaPredicted RBP9.3□□□□□ -0.92
SF3A1-210ENST00000498259 ITIH6Q6UXX5 1313 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 ADGRA2Q96PE1 1338 aa9.3□□□□□ -0.92
SF3A1-210ENST00000498259 CCDC169A6NNP5 214 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 LGALS16A8MUM7 142 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 ASAP2O43150 1006 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 NR2F2P24468 414 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 CPT1AP50416 773 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 EFNA5P52803 228 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 COPB1P53618 953 aaKnown RBP9.29□□□□□ -0.92
SF3A1-210ENST00000498259 MARSP56192 900 aaKnown RBP9.29□□□□□ -0.92
SF3A1-210ENST00000498259 TNFAIP2Q03169 654 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 UBXN1Q04323 297 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 CETN1Q12798 172 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 GRM1Q13255 1194 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 CRHR2Q13324 411 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 TFDP1Q14186 410 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 KRT31Q15323 416 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 LRRC41Q15345 812 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 MAN2A1Q16706 1144 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 UGCGQ16739 394 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 MTERF2Q49AM1 385 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 ZNF484Q5JVG2 852 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 IER5Q5VY09 327 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 TAPT1Q6NXT6 567 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 CCDC186Q7Z3E2 898 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 TMC6Q7Z403 805 aa9.29□□□□□ -0.92
SF3A1-210ENST00000498259 CNGA4Q8IV77 575 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms