RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ACTR10Q9NZ32 417 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 MBD1Q9UIS9 605 aaPredicted RBP5.27□□□□□ -1.57
USP54-217ENST00000498213 KCTD3Q9Y597 815 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 MRVI1Q9Y6F6 885 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 TONSLQ96HA7 1378 aa5.27□□□□□ -1.57
USP54-217ENST00000498213 ASTN2O75129 1339 aaPredicted RBP5.26□□□□□ -1.57
USP54-217ENST00000498213 CLSPNQ9HAW4 1339 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 TRBV23OR9-2A0A075B6M9 112 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 C2orf71A6NGG8 1288 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 AURKAO14965 403 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 N4BP3O15049 544 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 CORO7P57737 925 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 YBX1P67809 324 aaKnown RBP5.26□□□□□ -1.57
USP54-217ENST00000498213 RBM10P98175 930 aaKnown RBP5.26□□□□□ -1.57
USP54-217ENST00000498213 MVKQ03426 396 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 SREBF2Q12772 1141 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 TCERG1LQ5VWI1 586 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 ZC3H14Q6PJT7 736 aaKnown RBP5.26□□□□□ -1.57
USP54-217ENST00000498213 TMEM151BQ8IW70 566 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 FAM169BQ8N8A8 192 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 TESK2Q96S53 571 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 P2RX7Q99572 595 aaKnown RBP5.26□□□□□ -1.57
USP54-217ENST00000498213 CDX2Q99626 313 aaPredicted RBP5.26□□□□□ -1.57
USP54-217ENST00000498213 GDF15Q99988 308 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 KLHL14Q9P2G3 628 aa5.26□□□□□ -1.57
USP54-217ENST00000498213 ZMYND8Q9ULU4 1186 aaPredicted RBP5.26□□□□□ -1.57
USP54-217ENST00000498213 R3HCC1Q9Y3T6 440 aaKnown RBP5.26□□□□□ -1.57
USP54-217ENST00000498213 WASHC2AQ641Q2 1341 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 LAMA2P24043 3122 aaKnown RBP5.25□□□□□ -1.57
USP54-217ENST00000498213 SMAD7O15105 426 aaKnown RBP5.25□□□□□ -1.57
USP54-217ENST00000498213 KCNH1O95259 989 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 CYBBP04839 570 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 PAMP19021 973 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 PI3P19957 117 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 ALDH1B1P30837 517 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 MRE11P49959 708 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 ZNF143P52747 638 aaPredicted RBP5.25□□□□□ -1.57
USP54-217ENST00000498213 EPHB3P54753 998 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 PLEKHN1Q494U1 663 aaPredicted RBP5.25□□□□□ -1.57
USP54-217ENST00000498213 PRAMEF18Q5VWM3 479 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 PAQR3Q6TCH7 311 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 RPTNQ6XPR3 784 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 NBPF5PQ86XG9 351 aaPredicted RBP5.25□□□□□ -1.57
USP54-217ENST00000498213 ARHGEF39Q8N4T4 335 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 USP33Q8TEY7 942 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 MZB1Q8WU39 189 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 RCC1LQ96I51 464 aaKnown RBP5.25□□□□□ -1.57
USP54-217ENST00000498213 GCM1Q9NP62 436 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 LRP2BPQ9P2M1 347 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 SCAF8Q9UPN6 1271 aaKnown RBP5.25□□□□□ -1.57
USP54-217ENST00000498213 MUC6Q6W4X9 2439 aa5.25□□□□□ -1.57
USP54-217ENST00000498213 EYSQ5T1H1 3165 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 BCORQ6W2J9 1755 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 RBBP6Q7Z6E9 1792 aaKnown RBP5.24□□□□□ -1.57
USP54-217ENST00000498213 PRUNE2Q8WUY3 3088 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 NPHP3-ACAD11A0A0J9YXS1 232 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 PRAMEF22A3QJZ6 481 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 FYB1O15117 783 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 PPM1GO15355 546 aaPredicted RBP5.24□□□□□ -1.57
USP54-217ENST00000498213 FOXD2O60548 495 aaPredicted RBP5.24□□□□□ -1.57
USP54-217ENST00000498213 MSL3P1P0C860 447 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 SYN1P17600 705 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 PFKLP17858 780 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 MAPKAPK2P49137 400 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 SP3Q02447 781 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 ARID5AQ03989 594 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 SSPNQ14714 243 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 AMOTQ4VCS5 1084 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 UBE2Q1Q7Z7E8 422 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 TDHQ8IZJ6 230 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 BVESQ8NE79 360 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 ZNF428Q96B54 188 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 CNTD2Q9H8S5 307 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 GGA3Q9NZ52 723 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 APEX2Q9UBZ4 518 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 JAG2Q9Y219 1238 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 MRC1P22897 1456 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 ZNF831Q5JPB2 1677 aa5.24□□□□□ -1.57
USP54-217ENST00000498213 ZNF609O15014 1411 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 PKD1L2Q7Z442 2459 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 ST20-MTHFSA0A0A6YYL1 179 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 A0A0G2JLL6 359 aaPredicted RBP5.23□□□□□ -1.57
USP54-217ENST00000498213 F8W031 263 aaPredicted RBP5.23□□□□□ -1.57
USP54-217ENST00000498213 SRGAP3O43295 1099 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 NPHS1O60500 1241 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 DDAH1O94760 285 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 DBHP09172 617 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 DNAJA1P31689 397 aaKnown RBP5.23□□□□□ -1.57
USP54-217ENST00000498213 MTHFSP49914 203 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 CDR1P51861 262 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 EIF5P55010 431 aaKnown RBP5.23□□□□□ -1.57
USP54-217ENST00000498213 ZNF200P98182 395 aaPredicted RBP5.23□□□□□ -1.57
USP54-217ENST00000498213 CRHR2Q13324 411 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 SLC39A6Q13433 755 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 PRKG1Q13976 671 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 CBX2Q14781 532 aaPredicted RBP5.23□□□□□ -1.57
USP54-217ENST00000498213 TNIP1Q15025 636 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 SV2CQ496J9 727 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 C6orf15Q6UXA7 325 aaPredicted RBP5.23□□□□□ -1.57
USP54-217ENST00000498213 CPNE8Q86YQ8 564 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms