RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ALS2CR12Q96Q35 445 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 PANX2Q96RD6 677 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 INO80BQ9C086 356 aaPredicted RBP9.17□□□□□ -0.94
USP54-215ENST00000497106 ERAP1Q9NZ08 941 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 A0A1B0GTH6 734 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 WNT7AO00755 349 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 HNRNPDLO14979 420 aaKnown RBP9.17□□□□□ -0.94
USP54-215ENST00000497106 SLITRK3O94933 977 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 NR3C1P04150 777 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 RFX1P22670 979 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 SLC12A3P55017 1021 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 YWHAEP62258 255 aaKnown RBP9.17□□□□□ -0.94
USP54-215ENST00000497106 CACNB1Q02641 598 aaPredicted RBP9.17□□□□□ -0.94
USP54-215ENST00000497106 ADPGKQ9BRR6 497 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 MMTAG2Q9BU76 263 aaKnown RBP9.17□□□□□ -0.94
USP54-215ENST00000497106 POLR3FQ9H1D9 316 aaPredicted RBP9.17□□□□□ -0.94
USP54-215ENST00000497106 RRN3P2A6NIE6 340 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 PHKA2P46019 1235 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 CYP2J2P51589 502 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 PEX3P56589 373 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 GIT2Q14161 759 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 SLC9C1Q4G0N8 1177 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 MNS1Q8NEH6 495 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 OR6J1Q8NGC5 347 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 HSD17B14Q9BPX1 270 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 NDST4Q9H3R1 872 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 BZW2Q9Y6E2 419 aaKnown RBP9.17□□□□□ -0.94
USP54-215ENST00000497106 BTBD19C9JJ37 291 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 PRPF6O94906 941 aaKnown RBP9.17□□□□□ -0.94
USP54-215ENST00000497106 KRT9P35527 623 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 CHMP4BP1P59074 171 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 TNFAIP2Q03169 654 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 NOGQ13253 232 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 NOLC1Q14978 699 aaKnown RBP eCLIP9.17□□□□□ -0.94
USP54-215ENST00000497106 ASIC2Q16515 512 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 IER5Q5VY09 327 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 MOB2Q70IA6 237 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 LRRC8AQ8IWT6 810 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 METTL13Q8N6R0 699 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 ABHD16BQ9H3Z7 469 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 PAXBP1Q9Y5B6 917 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 BAZ2BQ9UIF8 2168 aaKnown RBP9.17□□□□□ -0.94
USP54-215ENST00000497106 IGSF9BQ9UPX0 1349 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 TMEM88BA6NKF7 163 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 DESP17661 470 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 ITGB5P18084 799 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 CPT1AP50416 773 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 STK4Q13043 487 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 EMC2Q15006 297 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 REPS2Q8NFH8 660 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 GJA10Q969M2 543 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 ZFP91Q96JP5 570 aaPredicted RBP9.16□□□□□ -0.94
USP54-215ENST00000497106 CYP26B1Q9NR63 512 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 MORF4L1Q9UBU8 362 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 PRDM4Q9UKN5 801 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 KRT86O43790 486 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 TAL1P17542 331 aaPredicted RBP9.16□□□□□ -0.94
USP54-215ENST00000497106 ADORA2AP29274 412 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 CLCN1P35523 988 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 FMR1Q06787 632 aaKnown RBP eCLIP9.16□□□□□ -0.94
USP54-215ENST00000497106 IQSEC1Q6DN90 963 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 CENPPQ6IPU0 288 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 ARMCX2Q7L311 632 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 XXYLT1Q8NBI6 393 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 SPIRE2Q8WWL2 714 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 POMGNT1Q8WZA1 660 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 AP3M2P53677 418 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 DGKDQ16760 1214 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 EXOC3L4Q17RC7 722 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 SFMBT2Q5VUG0 894 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 HAUS6Q7Z4H7 955 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 CYP2W1Q8TAV3 490 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 LSM14BQ9BX40 385 aaKnown RBP9.16□□□□□ -0.94
USP54-215ENST00000497106 SUGCTQ9HAC7 445 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 BTBD7Q9P203 1132 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 ADAMTSL1Q8N6G6 1762 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 K7ERI5 159 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 RTP1P59025 263 aa9.16□□□□□ -0.94
USP54-215ENST00000497106 A0A087WWV3 80 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 CYP2C8P10632 490 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 KCNJ6P48051 423 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 ZBED6P86452 979 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 MYL7Q01449 175 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 IRF5Q13568 498 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 DGKZQ13574 1117 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 TUBB2AQ13885 445 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 ANKRD40Q6AI12 368 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 FAM133AQ8N9E0 248 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 CNKSR2Q8WXI2 1034 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 LENG9Q96B70 501 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 TUBB2BQ9BVA1 445 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 RUSC1Q9BVN2 902 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.15□□□□□ -0.94
USP54-215ENST00000497106 DOCK1Q14185 1865 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 ATP1A3P13637 1013 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 CASQ1P31415 396 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 TCF7P36402 384 aaPredicted RBP9.15□□□□□ -0.94
USP54-215ENST00000497106 CDKAL1Q5VV42 579 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 PPP1R2P3Q6NXS1 205 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 ILDR2Q71H61 639 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms