RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TNS2Q63HR2 1409 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 LRRC53A6NM62 1247 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 TXNDC9O14530 226 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 PPP1R18Q6NYC8 613 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 FAM20AQ96MK3 541 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 UBE2TQ9NPD8 197 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 ZHX2Q9Y6X8 837 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 SMIM22K7EJ46 135 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 GFPT1Q06210 699 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 SEC23AQ15436 765 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 GPR162Q16538 588 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 RGL1Q9NZL6 768 aa17.6■□□□□ 0.41
CCDC88B-209ENST00000494080 GAS8O95995 478 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 NUGGCQ68CJ6 796 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 WRNIP1Q96S55 665 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 NRBP2Q9NSY0 501 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 PACSIN2Q9UNF0 486 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 PTPN22Q9Y2R2 807 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 KDM4FA0A1W2PPD8 638 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 MXI1P50539 228 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 KCTD2Q14681 263 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 CLUL1Q15846 466 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 ALKBH5Q6P6C2 394 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 GUF1Q8N442 669 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 SH2D3AQ9BRG2 576 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 MYO3BQ8WXR4 1341 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 THAP12O43422 761 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 SERPING1P05155 500 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 MTMR1Q13613 665 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 BRDTQ58F21 947 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 CCHCR1Q8TD31 782 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 PBKQ96KB5 322 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 PSMD1Q99460 953 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 PPP4CP60510 307 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 KCNH2Q12809 1159 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 CAPRIN2Q6IMN6 1127 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 ARHGAP24Q8N264 748 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 VGLL2Q8N8G2 317 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 ZIM3Q96PE6 472 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 TSC22D3Q99576 134 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 LIMA1Q9UHB6 759 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 CAPN11Q9UMQ6 739 aa17.59■□□□□ 0.41
CCDC88B-209ENST00000494080 INO80B-WBP1J3KQ70 363 aa17.58■□□□□ 0.41
CCDC88B-209ENST00000494080 TMEM191BP0C7N4 346 aa17.58■□□□□ 0.41
CCDC88B-209ENST00000494080 NFIAQ12857 509 aa17.58■□□□□ 0.41
CCDC88B-209ENST00000494080 INO80BQ9C086 356 aaPredicted RBP17.58■□□□□ 0.41
CCDC88B-209ENST00000494080 PSMD14O00487 310 aa17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 LMNB1P20700 586 aa17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 EIF3BP55884 814 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 PDXDC2PQ6P474 469 aa17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 IL17RAQ96F46 866 aa17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 TMEM206Q9H813 350 aa17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 AGPAT5Q9NUQ2 364 aa17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 NR3C1P04150 777 aa17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 CAPN12Q6ZSI9 719 aa17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 MIPOL1Q8TD10 442 aa17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 KCNV2Q8TDN2 545 aa17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 DDX47Q9H0S4 455 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-209ENST00000494080 H0YCG3 227 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 STAMBPO95630 424 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 SATB1Q01826 763 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 MS4A14Q96JA4 679 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 RAB21Q9UL25 225 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 NPHP3-ACAD11A0A0J9YXS1 232 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 RASGRF2O14827 1237 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 PTK2Q05397 1052 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 PHLDB2Q86SQ0 1253 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 ADSSL1Q8N142 457 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 MAP3K14Q99558 947 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 ZMYND12Q9H0C1 365 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 SLC40A1Q9NP59 571 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 MAD2L2Q9UI95 211 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 IPO5O00410 1097 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 MAP2K7O14733 419 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 PIK3CAP42336 1068 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 NSFP46459 744 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 PHLDB3Q6NSJ2 640 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 PPP4R3CPQ6ZMV5 832 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 RNPC3Q96LT9 517 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 RUNDC3BQ96NL0 473 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 VPS37BQ9H9H4 285 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 JMJD4Q9H9V9 463 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 NOD1Q9Y239 953 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 TROVE2P10155 538 aaKnown RBP eCLIP17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 PRELPP51888 382 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 MFAP3P55082 362 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 ERVK-24P63145 666 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 KCNB1Q14721 858 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 SLMAPQ14BN4 828 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 PADI6Q6TGC4 694 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 GDAP1Q8TB36 358 aa17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 TAF1DQ9H5J8 278 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 HERC5Q9UII4 1024 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-209ENST00000494080 A0A1W2PQC6 194 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 USP11P51784 963 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 HHIPL2Q6UWX4 724 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 APBB1IPQ7Z5R6 666 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 ARL8AQ96BM9 186 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 KCND1Q9NSA2 647 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms