RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CWF19L1Q69YN2 538 aaKnown RBP16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 LRRC55Q6ZSA7 311 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 TMC7Q7Z402 723 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 FAM228AQ86W67 206 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 CHD1LQ86WJ1 897 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 TEX2Q8IWB9 1127 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 MRPL43Q8N983 215 aaKnown RBP16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 NCOA7Q8NI08 942 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 CASD1Q96PB1 797 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 MXRA8Q9BRK3 442 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 SMOC2Q9H3U7 446 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 CDHR5Q9HBB8 845 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 DZANK1Q9NVP4 752 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 SPG21Q9NZD8 308 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 GINS2Q9Y248 185 aa16.27■□□□□ 0.2
PRPF40A-211ENST00000493468 DNAH14Q0VDD8 3507 aa16.26■□□□□ 0.19
PRPF40A-211ENST00000493468 ASGR2P07307 311 aa16.26■□□□□ 0.19
PRPF40A-211ENST00000493468 AOC1P19801 751 aa16.26■□□□□ 0.19
PRPF40A-211ENST00000493468 GNAQP50148 359 aa16.26■□□□□ 0.19
PRPF40A-211ENST00000493468 CCDC105Q8IYK2 499 aa16.26■□□□□ 0.19
PRPF40A-211ENST00000493468 ZNF654Q8IZM8 581 aa16.26■□□□□ 0.19
PRPF40A-211ENST00000493468 IGDCC4Q8TDY8 1250 aa16.26■□□□□ 0.19
PRPF40A-211ENST00000493468 RNF19AQ9NV58 838 aa16.26■□□□□ 0.19
PRPF40A-211ENST00000493468 PCDHA6Q9UN73 950 aa16.26■□□□□ 0.19
PRPF40A-211ENST00000493468 PCDHA8Q9Y5H6 950 aa16.26■□□□□ 0.19
PRPF40A-211ENST00000493468 E7EWF7 191 aa16.25■□□□□ 0.19
PRPF40A-211ENST00000493468 CLASP2O75122 1294 aaKnown RBP16.25■□□□□ 0.19
PRPF40A-211ENST00000493468 ANTXR2P58335 489 aa16.25■□□□□ 0.19
PRPF40A-211ENST00000493468 UBE2SQ16763 222 aa16.25■□□□□ 0.19
PRPF40A-211ENST00000493468 ZNF484Q5JVG2 852 aa16.25■□□□□ 0.19
PRPF40A-211ENST00000493468 SLC39A11Q8N1S5 342 aa16.25■□□□□ 0.19
PRPF40A-211ENST00000493468 MTA3Q9BTC8 594 aa16.25■□□□□ 0.19
PRPF40A-211ENST00000493468 WDR81Q562E7 1941 aa16.25■□□□□ 0.19
PRPF40A-211ENST00000493468 ZBTB42B2RXF5 422 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 EOMESO95936 686 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 NUCB1Q02818 461 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 ITGB3BPQ13352 177 aaPredicted RBP16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 AAMPQ13685 434 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 BMS1Q14692 1282 aaKnown RBP16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 ATAT1Q5SQI0 421 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 FAM160B1Q5W0V3 765 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 MB21D2Q8IYB1 491 aaPredicted RBP16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 ABI1Q8IZP0 508 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 SRBD1Q8N5C6 995 aaKnown RBP16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 OSMRQ99650 979 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 RTP3Q9BQQ7 232 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 SEMA4AQ9H3S1 761 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 LY9Q9HBG7 655 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 LIMD1Q9UGP4 676 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 IRAK3Q9Y616 596 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 FANCMQ8IYD8 2048 aa16.24■□□□□ 0.19
PRPF40A-211ENST00000493468 GPR32O75388 356 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 PLEKHA8P1O95397 391 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 C22orf31O95567 290 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 PBX3P40426 434 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 ANGPT1Q15389 498 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 KIZQ2M2Z5 673 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 CEP55Q53EZ4 464 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 RARS2Q5T160 578 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 ABHD15Q6UXT9 468 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 RSPH1Q8WYR4 309 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 MYL10Q9BUA6 226 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 AGO4Q9HCK5 861 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 CYP26B1Q9NR63 512 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 DBR1Q9UK59 544 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 C2orf16Q68DN1 1984 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 CACNA1BQ00975 2339 aa16.23■□□□□ 0.19
PRPF40A-211ENST00000493468 CARNS1A5YM72 827 aa16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 ARP10275 920 aa16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 NPR3P17342 541 aa16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 GIT2Q14161 759 aa16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 B4GALNT3Q6L9W6 998 aa16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 ECHDC2Q86YB7 292 aa16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 ZNF710Q8N1W2 664 aa16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 FLCNQ8NFG4 579 aa16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 CYP2W1Q8TAV3 490 aa16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 MRPL9Q9BYD2 267 aaKnown RBP16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 DUSP12Q9UNI6 340 aa16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 TAF6LQ9Y6J9 622 aa16.22■□□□□ 0.19
PRPF40A-211ENST00000493468 OTOGLQ3ZCN5 2332 aa16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 MEIS1O00470 390 aa16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 BACH1O14867 736 aa16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 CCNE2O96020 404 aa16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 WEE2P0C1S8 567 aa16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 TDGQ13569 410 aa16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 CLLU1OSQ5K130 101 aa16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 NIPA1Q7RTP0 329 aa16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 CCDC60Q8IWA6 550 aaPredicted RBP16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 DTWD2Q8NBA8 298 aa16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 ACSF2Q96CM8 615 aaPredicted RBP16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 ZBP1Q9H171 429 aa16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 RWDD1Q9H446 243 aaPredicted RBP16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 ZNF302Q9NR11 478 aa16.21■□□□□ 0.19
PRPF40A-211ENST00000493468 CEP250Q9BV73 2442 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 PI15O43692 258 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 FOSP01100 380 aaPredicted RBP16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 CALM1P0DP23 149 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 CALM2P0DP24 149 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 CALM3P0DP25 149 aa16.2■□□□□ 0.18
PRPF40A-211ENST00000493468 ZSCAN20P17040 1043 aaPredicted RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms