RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 CEP89Q96ST8 783 aa27.72■■■□□ 2.03
UPF3A-209ENST00000492270 NIFKQ9BYG3 293 aaKnown RBP27.72■■■□□ 2.03
UPF3A-209ENST00000492270 SUGCTQ9HAC7 445 aa27.72■■■□□ 2.03
UPF3A-209ENST00000492270 MTUS1Q9ULD2 1270 aa27.72■■■□□ 2.03
UPF3A-209ENST00000492270 AKT3Q9Y243 479 aa27.72■■■□□ 2.03
UPF3A-209ENST00000492270 DDX11L8A8MPP1 907 aa27.71■■■□□ 2.03
UPF3A-209ENST00000492270 NEMFO60524 1076 aa27.71■■■□□ 2.03
UPF3A-209ENST00000492270 GPR32O75388 356 aa27.71■■■□□ 2.03
UPF3A-209ENST00000492270 BAG4O95429 457 aaKnown RBP27.71■■■□□ 2.03
UPF3A-209ENST00000492270 PLA2G4FQ68DD2 849 aa27.71■■■□□ 2.03
UPF3A-209ENST00000492270 ANO5Q75V66 913 aa27.71■■■□□ 2.03
UPF3A-209ENST00000492270 SP7Q8TDD2 431 aaPredicted RBP27.71■■■□□ 2.03
UPF3A-209ENST00000492270 ZNF668Q96K58 619 aaPredicted RBP27.71■■■□□ 2.03
UPF3A-209ENST00000492270 TMX1Q9H3N1 280 aa27.71■■■□□ 2.03
UPF3A-209ENST00000492270 ERVK-5Q9HDB9 667 aa27.71■■■□□ 2.03
UPF3A-209ENST00000492270 PRRC2BQ5JSZ5 2229 aaKnown RBP27.7■■■□□ 2.02
UPF3A-209ENST00000492270 QARSP47897 775 aaKnown RBP27.7■■■□□ 2.02
UPF3A-209ENST00000492270 DRP2Q13474 957 aa27.7■■■□□ 2.02
UPF3A-209ENST00000492270 EPHA7Q15375 998 aa27.7■■■□□ 2.02
UPF3A-209ENST00000492270 PPM1EQ8WY54 764 aa27.7■■■□□ 2.02
UPF3A-209ENST00000492270 MAP7D2Q96T17 732 aa27.7■■■□□ 2.02
UPF3A-209ENST00000492270 YME1L1Q96TA2 773 aa27.7■■■□□ 2.02
UPF3A-209ENST00000492270 TMEM60Q9H2L4 133 aa27.7■■■□□ 2.02
UPF3A-209ENST00000492270 FOXP1Q9H334 677 aaPredicted RBP27.7■■■□□ 2.02
UPF3A-209ENST00000492270 RGL1Q9NZL6 768 aa27.7■■■□□ 2.02
UPF3A-209ENST00000492270 RPS6KA5O75582 802 aa27.69■■■□□ 2.02
UPF3A-209ENST00000492270 TMOD1P28289 359 aa27.69■■■□□ 2.02
UPF3A-209ENST00000492270 NLRP11P59045 1033 aaKnown RBP27.69■■■□□ 2.02
UPF3A-209ENST00000492270 NFX1Q12986 1120 aaKnown RBP27.69■■■□□ 2.02
UPF3A-209ENST00000492270 DYDC2Q96IM9 177 aa27.69■■■□□ 2.02
UPF3A-209ENST00000492270 LXNQ9BS40 222 aa27.69■■■□□ 2.02
UPF3A-209ENST00000492270 MGEA5O60502 916 aa27.68■■■□□ 2.02
UPF3A-209ENST00000492270 P4HBP07237 508 aaKnown RBP27.68■■■□□ 2.02
UPF3A-209ENST00000492270 MCM7P33993 719 aa27.68■■■□□ 2.02
UPF3A-209ENST00000492270 TXKP42681 527 aa27.68■■■□□ 2.02
UPF3A-209ENST00000492270 CRYBB1P53674 252 aaPredicted RBP27.68■■■□□ 2.02
UPF3A-209ENST00000492270 CYP4A11Q02928 519 aa27.68■■■□□ 2.02
UPF3A-209ENST00000492270 CTTNQ14247 550 aaKnown RBP27.68■■■□□ 2.02
UPF3A-209ENST00000492270 FAM228AQ86W67 206 aa27.68■■■□□ 2.02
UPF3A-209ENST00000492270 ZNF579Q8NAF0 562 aaKnown RBP27.68■■■□□ 2.02
UPF3A-209ENST00000492270 GDPD5Q8WTR4 605 aa27.68■■■□□ 2.02
UPF3A-209ENST00000492270 MTMR9Q96QG7 549 aa27.68■■■□□ 2.02
UPF3A-209ENST00000492270 TGS1Q96RS0 853 aaKnown RBP27.68■■■□□ 2.02
UPF3A-209ENST00000492270 C17orf80Q9BSJ5 609 aa27.68■■■□□ 2.02
UPF3A-209ENST00000492270 FTHL17Q9BXU8 183 aa27.68■■■□□ 2.02
UPF3A-209ENST00000492270 ADAMTS10Q9H324 1103 aa27.68■■■□□ 2.02
UPF3A-209ENST00000492270 TTC12Q9H892 705 aaPredicted RBP27.68■■■□□ 2.02
UPF3A-209ENST00000492270 PCDHA12Q9UN75 941 aa27.68■■■□□ 2.02
UPF3A-209ENST00000492270 FNDC1Q4ZHG4 1894 aaPredicted RBP27.68■■■□□ 2.02
UPF3A-209ENST00000492270 ATG2AQ2TAZ0 1938 aa27.67■■■□□ 2.02
UPF3A-209ENST00000492270 NPEPPSP55786 919 aa27.67■■■□□ 2.02
UPF3A-209ENST00000492270 ERVK-21P61565 698 aa27.67■■■□□ 2.02
UPF3A-209ENST00000492270 CCDC85BQ15834 202 aaPredicted RBP27.67■■■□□ 2.02
UPF3A-209ENST00000492270 TSPYL2Q9H2G4 693 aaPredicted RBP27.67■■■□□ 2.02
UPF3A-209ENST00000492270 ST3GAL5Q9UNP4 418 aa27.67■■■□□ 2.02
UPF3A-209ENST00000492270 IGKV6-21A0A0C4DH24 114 aa27.66■■■□□ 2.02
UPF3A-209ENST00000492270 LPXNO60711 386 aa27.66■■■□□ 2.02
UPF3A-209ENST00000492270 GPC3P51654 580 aa27.66■■■□□ 2.02
UPF3A-209ENST00000492270 GRB10Q13322 594 aa27.66■■■□□ 2.02
UPF3A-209ENST00000492270 GNL2Q13823 731 aaKnown RBP27.66■■■□□ 2.02
UPF3A-209ENST00000492270 NOSTRINQ8IVI9 506 aa27.66■■■□□ 2.02
UPF3A-209ENST00000492270 BACH2Q9BYV9 841 aa27.66■■■□□ 2.02
UPF3A-209ENST00000492270 RC3H2Q9HBD1 1191 aaKnown RBP27.66■■■□□ 2.02
UPF3A-209ENST00000492270 ZBTB39O15060 712 aa27.65■■■□□ 2.02
UPF3A-209ENST00000492270 MAFO75444 373 aaPredicted RBP27.65■■■□□ 2.02
UPF3A-209ENST00000492270 ZNF174Q15697 407 aa27.65■■■□□ 2.02
UPF3A-209ENST00000492270 PHF6Q8IWS0 365 aaKnown RBP eCLIP27.65■■■□□ 2.02
UPF3A-209ENST00000492270 MICALL1Q8N3F8 863 aa27.65■■■□□ 2.02
UPF3A-209ENST00000492270 EIF2AK1Q9BQI3 630 aaKnown RBP27.65■■■□□ 2.02
UPF3A-209ENST00000492270 PRDM6Q9NQX0 595 aa27.65■■■□□ 2.02
UPF3A-209ENST00000492270 CYP26B1Q9NR63 512 aa27.65■■■□□ 2.02
UPF3A-209ENST00000492270 MTCH2Q9Y6C9 303 aa27.65■■■□□ 2.02
UPF3A-209ENST00000492270 POTEMA6NI47 508 aa27.64■■■□□ 2.02
UPF3A-209ENST00000492270 DKC1O60832 514 aaKnown RBP eCLIP27.64■■■□□ 2.02
UPF3A-209ENST00000492270 IBSPP21815 317 aaPredicted RBP27.64■■■□□ 2.02
UPF3A-209ENST00000492270 NBR1Q14596 966 aa27.64■■■□□ 2.02
UPF3A-209ENST00000492270 C4orf19Q8IY42 314 aa27.64■■■□□ 2.02
UPF3A-209ENST00000492270 CRIPAKQ8N1N5 446 aa27.64■■■□□ 2.02
UPF3A-209ENST00000492270 IL27Q8NEV9 243 aa27.64■■■□□ 2.02
UPF3A-209ENST00000492270 BMP2KQ9NSY1 1161 aaPredicted RBP27.64■■■□□ 2.02
UPF3A-209ENST00000492270 ADGRA3Q8IWK6 1321 aa27.64■■■□□ 2.01
UPF3A-209ENST00000492270 GPR182O15218 404 aa27.63■■■□□ 2.01
UPF3A-209ENST00000492270 SLITRK3O94933 977 aa27.63■■■□□ 2.01
UPF3A-209ENST00000492270 YWHABP31946 246 aaKnown RBP27.63■■■□□ 2.01
UPF3A-209ENST00000492270 TTC38Q5R3I4 469 aa27.63■■■□□ 2.01
UPF3A-209ENST00000492270 TPH2Q8IWU9 490 aa27.63■■■□□ 2.01
UPF3A-209ENST00000492270 CEP170P1Q96L14 293 aa27.63■■■□□ 2.01
UPF3A-209ENST00000492270 SCLT1Q96NL6 688 aa27.63■■■□□ 2.01
UPF3A-209ENST00000492270 ZSWIM4Q9H7M6 989 aa27.63■■■□□ 2.01
UPF3A-209ENST00000492270 U2AF2P26368 475 aaKnown RBP eCLIP27.62■■■□□ 2.01
UPF3A-209ENST00000492270 GJB2P29033 226 aa27.62■■■□□ 2.01
UPF3A-209ENST00000492270 MCM2P49736 904 aa27.62■■■□□ 2.01
UPF3A-209ENST00000492270 NLRP7Q8WX94 980 aa27.62■■■□□ 2.01
UPF3A-209ENST00000492270 ZNF689Q96CS4 500 aaPredicted RBP27.62■■■□□ 2.01
UPF3A-209ENST00000492270 ADAM2Q99965 735 aa27.62■■■□□ 2.01
UPF3A-209ENST00000492270 GTF3C3Q9Y5Q9 886 aa27.62■■■□□ 2.01
UPF3A-209ENST00000492270 DENND3A2RUS2 1198 aa27.61■■■□□ 2.01
UPF3A-209ENST00000492270 CSDE1O75534 798 aaKnown RBP27.61■■■□□ 2.01
UPF3A-209ENST00000492270 DGKIO75912 1065 aa27.61■■■□□ 2.01
UPF3A-209ENST00000492270 POU3F3P20264 500 aaPredicted RBP27.61■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms