RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 RSPH10B2B2RC85 870 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 GAS2O43903 313 aaKnown RBP12.12□□□□□ -0.47
VPS13D-210ENST00000489961 DGAT1O75907 488 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 EYA4O95677 639 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 CTSHP09668 335 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 IQCF3P0C7M6 154 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 RSPH10BP0C881 870 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 ITGB8P26012 769 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 RFC2P35250 354 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 CLCN3P51790 818 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 MDM2Q00987 491 aaPredicted RBP12.12□□□□□ -0.47
VPS13D-210ENST00000489961 FPGSQ05932 587 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 PPIGQ13427 754 aaKnown RBP eCLIP12.12□□□□□ -0.475e-7■□□□□ 8.2
VPS13D-210ENST00000489961 ECM1Q16610 540 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 SPECC1Q5M775 1068 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 ZNF618Q5T7W0 954 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 ZNF710Q8N1W2 664 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 LRRC71Q8N4P6 559 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 ZNF579Q8NAF0 562 aaKnown RBP12.12□□□□□ -0.47
VPS13D-210ENST00000489961 SYMPKQ92797 1274 aaKnown RBP12.12□□□□□ -0.47
VPS13D-210ENST00000489961 PNMA5Q96PV4 448 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 MTRQ99707 1265 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 WNT8AQ9H1J5 351 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 DHX33Q9H6R0 707 aaKnown RBP12.12□□□□□ -0.47
VPS13D-210ENST00000489961 AKT3Q9Y243 479 aa12.12□□□□□ -0.47
VPS13D-210ENST00000489961 PDE4DIPQ5VU43 2346 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 MKI67P46013 3256 aaKnown RBP12.11□□□□□ -0.47
VPS13D-210ENST00000489961 A0A087WWV3 80 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 IGKV6-21A0A0C4DH24 114 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 CSF2RAP15509 400 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 MAGEA10P43363 369 aaPredicted RBP12.11□□□□□ -0.47
VPS13D-210ENST00000489961 MRPS6P82932 125 aaKnown RBP12.11□□□□□ -0.47
VPS13D-210ENST00000489961 GRB10Q13322 594 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 EMC2Q15006 297 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 TMEM119Q4V9L6 283 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 FAM26DQ5JW98 314 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 RPUSD2Q8IZ73 545 aaKnown RBP12.11□□□□□ -0.47
VPS13D-210ENST00000489961 KIAA0319LQ8IZA0 1049 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 LINC01465Q8N7H1 131 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 LEO1Q8WVC0 666 aaPredicted RBP12.11□□□□□ -0.47
VPS13D-210ENST00000489961 TCP11Q8WWU5 503 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 SCLYQ96I15 445 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 EPSTI1Q96J88 318 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 PLIN2Q99541 437 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 BHMT2Q9H2M3 363 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 ATP6V0A4Q9HBG4 840 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 TRPV2Q9Y5S1 764 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 CDY2AQ9Y6F7 541 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 SCN5AQ14524 2016 aa12.11□□□□□ -0.47
VPS13D-210ENST00000489961 E9PMD0 336 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 USO1O60763 962 aaKnown RBP12.1□□□□□ -0.47
VPS13D-210ENST00000489961 VTNP04004 478 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 PFKMP08237 780 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 PLCG1P19174 1290 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 CDC42EP1Q00587 391 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 MGAT3Q09327 533 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 TMEM62Q0P6H9 643 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 KARSQ15046 597 aaKnown RBP12.1□□□□□ -0.47
VPS13D-210ENST00000489961 PRPF38BQ5VTL8 546 aaKnown RBP12.1□□□□□ -0.47
VPS13D-210ENST00000489961 TRAF7Q6Q0C0 670 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 PADI6Q6TGC4 694 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 CCDC73Q6ZRK6 1079 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 USP49Q70CQ1 688 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 MCPH1Q8NEM0 835 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 PSPC1Q8WXF1 523 aaKnown RBP12.1□□□□□ -0.47
VPS13D-210ENST00000489961 CHAMP1Q96JM3 812 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 CELF4Q9BZC1 486 aaKnown RBP12.1□□□□□ -0.47
VPS13D-210ENST00000489961 IL23AQ9NPF7 189 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 BMP2KQ9NSY1 1161 aaPredicted RBP12.1□□□□□ -0.47
VPS13D-210ENST00000489961 SUCLA2Q9P2R7 463 aaPredicted RBP12.1□□□□□ -0.47
VPS13D-210ENST00000489961 PCDHA7Q9UN72 937 aa12.1□□□□□ -0.47
VPS13D-210ENST00000489961 TNRC18O15417 2968 aaPredicted RBP12.1□□□□□ -0.47
VPS13D-210ENST00000489961 SIP14410 1827 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 CHRNA1P02708 482 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 SSBP05455 408 aaKnown RBP eCLIP12.09□□□□□ -0.47
VPS13D-210ENST00000489961 PLA2G4BP0C869 781 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 CYP11B2P19099 503 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 AXDND1Q5T1B0 1012 aaPredicted RBP12.09□□□□□ -0.47
VPS13D-210ENST00000489961 RRAGBQ5VZM2 374 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 KCNK18Q7Z418 384 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 DEFB128Q7Z7B8 93 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 TMEM143Q96AN5 459 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 SCLT1Q96NL6 688 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 GDF15Q99988 308 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 UBE2OQ9C0C9 1292 aaKnown RBP12.09□□□□□ -0.47
VPS13D-210ENST00000489961 FAM13BQ9NYF5 915 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 PCDH10Q9P2E7 1040 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 STK17AQ9UEE5 414 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 GINS2Q9Y248 185 aa12.09□□□□□ -0.47
VPS13D-210ENST00000489961 ASAP2O43150 1006 aa12.08□□□□□ -0.48
VPS13D-210ENST00000489961 ACTN1P12814 892 aa12.08□□□□□ -0.48
VPS13D-210ENST00000489961 STAT6P42226 847 aa12.08□□□□□ -0.48
VPS13D-210ENST00000489961 GPC3P51654 580 aa12.08□□□□□ -0.48
VPS13D-210ENST00000489961 CRYBB1P53674 252 aaPredicted RBP12.08□□□□□ -0.48
VPS13D-210ENST00000489961 NLRP11P59045 1033 aaKnown RBP12.08□□□□□ -0.48
VPS13D-210ENST00000489961 MKRN4PQ13434 485 aaPredicted RBP12.08□□□□□ -0.48
VPS13D-210ENST00000489961 DRP2Q13474 957 aa12.08□□□□□ -0.48
VPS13D-210ENST00000489961 MXD4Q14582 209 aaPredicted RBP12.08□□□□□ -0.48
VPS13D-210ENST00000489961 CSPP1Q1MSJ5 1256 aa12.08□□□□□ -0.48
VPS13D-210ENST00000489961 KIZQ2M2Z5 673 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms