RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 FTHL17Q9BXU8 183 aa7.91□□□□□ -1.14
VPS50-218ENST00000485994 NIFKQ9BYG3 293 aaKnown RBP7.91□□□□□ -1.14
VPS50-218ENST00000485994 IFIH1Q9BYX4 1025 aaKnown RBP7.91□□□□□ -1.14
VPS50-218ENST00000485994 CELF4Q9BZC1 486 aaKnown RBP7.91□□□□□ -1.14
VPS50-218ENST00000485994 PRDM12Q9H4Q4 367 aa7.91□□□□□ -1.14
VPS50-218ENST00000485994 KCNMB3Q9NPA1 279 aa7.91□□□□□ -1.14
VPS50-218ENST00000485994 LIMCH1Q9UPQ0 1083 aa7.91□□□□□ -1.14
VPS50-218ENST00000485994 CDY2AQ9Y6F7 541 aa7.91□□□□□ -1.14
VPS50-218ENST00000485994 TTC28Q96AY4 2481 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 IGSF9BQ9UPX0 1349 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 CCDC194A0A1B0GVG4 234 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 ZNF862O60290 1169 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 GAS7O60861 476 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 TMOD1P28289 359 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 PPP2R5CQ13362 524 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 ADGRE1Q14246 886 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 LPIN1Q14693 890 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 TARBP2Q15633 366 aaKnown RBP7.9□□□□□ -1.14
VPS50-218ENST00000485994 INF2Q27J81 1249 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 PROX2Q3B8N5 592 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 XKR3Q5GH77 459 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 LRCH2Q5VUJ6 765 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.9□□□□□ -1.14
VPS50-218ENST00000485994 RTN4RL1Q86UN2 441 aaPredicted RBP7.9□□□□□ -1.14
VPS50-218ENST00000485994 TNFRSF25Q93038 417 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 TGS1Q96RS0 853 aaKnown RBP7.9□□□□□ -1.14
VPS50-218ENST00000485994 OSBPL7Q9BZF2 842 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 SH2B1Q9NRF2 756 aaPredicted RBP7.9□□□□□ -1.14
VPS50-218ENST00000485994 GABBR1Q9UBS5 961 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 KCNJ14Q9UNX9 436 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 PPME1Q9Y570 386 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 TRPV2Q9Y5S1 764 aa7.9□□□□□ -1.14
VPS50-218ENST00000485994 IGKV6-21A0A0C4DH24 114 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 LINC01553A4QN01 128 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 M0QZ92 97 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 DDX39AO00148 427 aaKnown RBP7.89□□□□□ -1.15
VPS50-218ENST00000485994 GPR182O15218 404 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 DKC1O60832 514 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS50-218ENST00000485994 STBD1O95210 358 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 BAG4O95429 457 aaKnown RBP7.89□□□□□ -1.15
VPS50-218ENST00000485994 LARGE1O95461 756 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 TDP2O95551 362 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 C22orf31O95567 290 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 MMP1P03956 469 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 RB1P06400 928 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 CTSHP09668 335 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 GHRP10912 638 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 CRYBB1P53674 252 aaPredicted RBP7.89□□□□□ -1.15
VPS50-218ENST00000485994 IGBP1P78318 339 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 FAM189BP81408 668 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 EXOC8Q8IYI6 725 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 SLFN12Q8IYM2 578 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 NECAB1Q8N987 351 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 HAS1Q92839 578 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 ZNF689Q96CS4 500 aaPredicted RBP7.89□□□□□ -1.15
VPS50-218ENST00000485994 CEP89Q96ST8 783 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 UNC45AQ9H3U1 944 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 AGO3Q9H9G7 860 aaKnown RBP7.89□□□□□ -1.15
VPS50-218ENST00000485994 BRMS1Q9HCU9 246 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 DDX25Q9UHL0 483 aaKnown RBP7.89□□□□□ -1.15
VPS50-218ENST00000485994 SAMM50Q9Y512 469 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 MTCH2Q9Y6C9 303 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 SIP14410 1827 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 UNC80Q8N2C7 3258 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 COL4A6Q14031 1691 aa7.89□□□□□ -1.15
VPS50-218ENST00000485994 SPTBN5Q9NRC6 3674 aaKnown RBP7.88□□□□□ -1.15
VPS50-218ENST00000485994 C5orf67F2Z3F1 127 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 LPXNO60711 386 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 GPR32O75388 356 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 ARHGEF15O94989 841 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 OATP04181 439 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 P4HBP07237 508 aaKnown RBP7.88□□□□□ -1.15
VPS50-218ENST00000485994 STAG3L1P0CL83 205 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 KRT2P35908 639 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 PSMC5P62195 406 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 HMGN5P82970 282 aaKnown RBP7.88□□□□□ -1.15
VPS50-218ENST00000485994 ORC2Q13416 577 aaPredicted RBP7.88□□□□□ -1.15
VPS50-218ENST00000485994 EPHA7Q15375 998 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 LETM2Q2VYF4 491 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 KRT40Q6A162 431 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 EFCAB12Q6NXP0 572 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 PIK3AP1Q6ZUJ8 805 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 MIER3Q7Z3K6 550 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS50-218ENST00000485994 C4orf19Q8IY42 314 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 CKAP2LQ8IYA6 745 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 MYOCDQ8IZQ8 938 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 TRAPPC12Q8WVT3 735 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 ATXN2LQ8WWM7 1075 aaKnown RBP7.88□□□□□ -1.15
VPS50-218ENST00000485994 CLP1Q92989 425 aaKnown RBP7.88□□□□□ -1.15
VPS50-218ENST00000485994 JPH2Q9BR39 696 aaPredicted RBP7.88□□□□□ -1.15
VPS50-218ENST00000485994 ADAMTS10Q9H324 1103 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 SUGCTQ9HAC7 445 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 CDHR5Q9HBB8 845 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 RC3H2Q9HBD1 1191 aaKnown RBP7.88□□□□□ -1.15
VPS50-218ENST00000485994 RGS18Q9NS28 235 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 GJB4Q9NTQ9 266 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 PADI3Q9ULW8 664 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 RWDD3Q9Y3V2 267 aa7.88□□□□□ -1.15
VPS50-218ENST00000485994 EYSQ5T1H1 3165 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms