RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 ZNF668Q96K58 619 aaPredicted RBP13.22□□□□□ -0.29
HPS4-214ENST00000485842 RNPC3Q96LT9 517 aaKnown RBP13.22□□□□□ -0.29
HPS4-214ENST00000485842 NACC1Q96RE7 527 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 CEP89Q96ST8 783 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 MMTAG2Q9BU76 263 aaKnown RBP13.22□□□□□ -0.29
HPS4-214ENST00000485842 ANKEF1Q9NU02 776 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 DDX19AQ9NUU7 478 aaKnown RBP13.22□□□□□ -0.29
HPS4-214ENST00000485842 KIAA1024Q9UPX6 916 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 KDM3AQ9Y4C1 1321 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 ZBBXA8MT70 800 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 USO1O60763 962 aaKnown RBP13.21□□□□□ -0.29
HPS4-214ENST00000485842 MAFO75444 373 aaPredicted RBP13.21□□□□□ -0.29
HPS4-214ENST00000485842 FGBP02675 491 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 PFKMP08237 780 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 NCLP19338 710 aaKnown RBP13.21□□□□□ -0.29
HPS4-214ENST00000485842 LONP1P36776 959 aaKnown RBP13.21□□□□□ -0.29
HPS4-214ENST00000485842 RFC5P40937 340 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 RARRES1P49788 294 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 DNM1Q05193 864 aaKnown RBP13.21□□□□□ -0.29
HPS4-214ENST00000485842 MGAT3Q09327 533 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 DRP2Q13474 957 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 GPNMBQ14956 572 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 EMC2Q15006 297 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 SLC39A14Q15043 492 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 KIZQ2M2Z5 673 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 FAM26DQ5JW98 314 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 OTOP2Q7RTS6 562 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 NME8Q8N427 588 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 LINC01465Q8N7H1 131 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 VWCEQ96DN2 955 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 CDK5RAP3Q96JB5 506 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 SCLT1Q96NL6 688 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 PLIN2Q99541 437 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 JPH2Q9BR39 696 aaPredicted RBP13.21□□□□□ -0.29
HPS4-214ENST00000485842 OSBPL7Q9BZF2 842 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 FBXO2Q9UK22 296 aaPredicted RBP13.21□□□□□ -0.29
HPS4-214ENST00000485842 PPME1Q9Y570 386 aa13.21□□□□□ -0.29
HPS4-214ENST00000485842 ARHGEF35A5YM69 484 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 SPTLC2O15270 562 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 CXCL10P02778 98 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 ACTN1P12814 892 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 MUTP22033 750 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 UBA7P41226 1012 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 DNM2P50570 870 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 SPECC1Q5M775 1068 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 FBXO47Q5MNV8 452 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 CABP7Q86V35 215 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 LINC00301Q8NCQ3 95 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 RASSF8Q8NHQ8 419 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 TMEM143Q96AN5 459 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 CHAMP1Q96JM3 812 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 AK8Q96MA6 479 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 CLIC6Q96NY7 704 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 OSMRQ99650 979 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 MTRQ99707 1265 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 CELF4Q9BZC1 486 aaKnown RBP13.2□□□□□ -0.3
HPS4-214ENST00000485842 CSRNP2Q9H175 543 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 DHX33Q9H6R0 707 aaKnown RBP13.2□□□□□ -0.3
HPS4-214ENST00000485842 CDHR5Q9HBB8 845 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 ATP6V0A4Q9HBG4 840 aa13.2□□□□□ -0.3
HPS4-214ENST00000485842 SUCLA2Q9P2R7 463 aaPredicted RBP13.2□□□□□ -0.3
HPS4-214ENST00000485842 DBR1Q9UK59 544 aaKnown RBP13.2□□□□□ -0.3
HPS4-214ENST00000485842 SRPRBQ9Y5M8 271 aaKnown RBP13.2□□□□□ -0.3
HPS4-214ENST00000485842 TRIOBPQ9H2D6 2365 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 IGKV6-21A0A0C4DH24 114 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 A0A1W2PPC1 479 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 E9PMD0 336 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 DGAT1O75907 488 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 YEATS4O95619 227 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 XRCC6P12956 609 aaKnown RBP eCLIP13.19□□□□□ -0.36e-6■■■■■ 31.4
HPS4-214ENST00000485842 NLRP11P59045 1033 aaKnown RBP13.19□□□□□ -0.3
HPS4-214ENST00000485842 GRB10Q13322 594 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 MKRN4PQ13434 485 aaPredicted RBP13.19□□□□□ -0.3
HPS4-214ENST00000485842 LPIN1Q14693 890 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 TCTN1Q2MV58 587 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 CNKSR3Q6P9H4 555 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 MAEAQ7L5Y9 396 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 KCNK18Q7Z418 384 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 RHPN2Q8IUC4 686 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 EXOC8Q8IYI6 725 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 KRI1Q8N9T8 703 aaKnown RBP13.19□□□□□ -0.3
HPS4-214ENST00000485842 DBF4BQ8NFT6 615 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 NLRP7Q8WX94 980 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 CALML4Q96GE6 196 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 PNMA5Q96PV4 448 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 IFIH1Q9BYX4 1025 aaKnown RBP13.19□□□□□ -0.3
HPS4-214ENST00000485842 NT5C3AQ9H0P0 336 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 MTIF3Q9H2K0 278 aaKnown RBP13.19□□□□□ -0.3
HPS4-214ENST00000485842 BHMT2Q9H2M3 363 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 XPNPEP1Q9NQW7 623 aa13.19□□□□□ -0.3
HPS4-214ENST00000485842 CXXC1Q9P0U4 656 aaPredicted RBP13.19□□□□□ -0.3
HPS4-214ENST00000485842 GAS2O43903 313 aaKnown RBP13.18□□□□□ -0.3
HPS4-214ENST00000485842 EYA4O95677 639 aa13.18□□□□□ -0.3
HPS4-214ENST00000485842 SSBP05455 408 aaKnown RBP eCLIP13.18□□□□□ -0.3
HPS4-214ENST00000485842 CD52P31358 61 aa13.18□□□□□ -0.3
HPS4-214ENST00000485842 TXLNAP40222 546 aa13.18□□□□□ -0.3
HPS4-214ENST00000485842 KCNJ6P48051 423 aa13.18□□□□□ -0.3
HPS4-214ENST00000485842 GPC3P51654 580 aa13.18□□□□□ -0.3
HPS4-214ENST00000485842 NUCB2P80303 420 aa13.18□□□□□ -0.3
HPS4-214ENST00000485842 KARSQ15046 597 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms