RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 METTL13Q8N6R0 699 aa17.76■□□□□ 0.43
UPF3A-208ENST00000484246 DBF4BQ8NFT6 615 aa17.76■□□□□ 0.43
UPF3A-208ENST00000484246 CEP170P1Q96L14 293 aa17.76■□□□□ 0.43
UPF3A-208ENST00000484246 IFIH1Q9BYX4 1025 aaKnown RBP17.76■□□□□ 0.43
UPF3A-208ENST00000484246 OSBPL7Q9BZF2 842 aa17.76■□□□□ 0.43
UPF3A-208ENST00000484246 LRWD1Q9UFC0 647 aa17.76■□□□□ 0.43
UPF3A-208ENST00000484246 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.75■□□□□ 0.43
UPF3A-208ENST00000484246 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.75■□□□□ 0.43
UPF3A-208ENST00000484246 SLC26A4O43511 780 aa17.75■□□□□ 0.43
UPF3A-208ENST00000484246 GPR32O75388 356 aa17.75■□□□□ 0.43
UPF3A-208ENST00000484246 GHRP10912 638 aa17.75■□□□□ 0.43
UPF3A-208ENST00000484246 RARRES1P49788 294 aa17.75■□□□□ 0.43
UPF3A-208ENST00000484246 CRYBB1P53674 252 aaPredicted RBP17.75■□□□□ 0.43
UPF3A-208ENST00000484246 NPEPPSP55786 919 aa17.75■□□□□ 0.43
UPF3A-208ENST00000484246 WDR5P61964 334 aaKnown RBP17.75■□□□□ 0.43
UPF3A-208ENST00000484246 CDC42EP1Q00587 391 aa17.75■□□□□ 0.43
UPF3A-208ENST00000484246 LRRC71Q8N4P6 559 aa17.75■□□□□ 0.43
UPF3A-208ENST00000484246 KCTD17Q8N5Z5 321 aa17.75■□□□□ 0.43
UPF3A-208ENST00000484246 SLC7A3Q8WY07 619 aa17.75■□□□□ 0.43
UPF3A-208ENST00000484246 DBR1Q9UK59 544 aaKnown RBP17.75■□□□□ 0.43
UPF3A-208ENST00000484246 SLC4A7Q9Y6M7 1214 aa17.75■□□□□ 0.43
UPF3A-208ENST00000484246 SZT2Q5T011 3432 aa17.75■□□□□ 0.43
UPF3A-208ENST00000484246 TMEM265A0A087WTH1 108 aa17.74■□□□□ 0.43
UPF3A-208ENST00000484246 GPC3P51654 580 aa17.74■□□□□ 0.43
UPF3A-208ENST00000484246 IKBKEQ14164 716 aa17.74■□□□□ 0.43
UPF3A-208ENST00000484246 PTPAQ15257 358 aa17.74■□□□□ 0.43
UPF3A-208ENST00000484246 SF3A1Q15459 793 aaKnown RBP17.74■□□□□ 0.43
UPF3A-208ENST00000484246 HYIQ5T013 277 aa17.74■□□□□ 0.43
UPF3A-208ENST00000484246 ZNF579Q8NAF0 562 aaKnown RBP17.74■□□□□ 0.43
UPF3A-208ENST00000484246 AK8Q96MA6 479 aa17.74■□□□□ 0.43
UPF3A-208ENST00000484246 NACC1Q96RE7 527 aa17.74■□□□□ 0.43
UPF3A-208ENST00000484246 ADAMTS10Q9H324 1103 aa17.74■□□□□ 0.43
UPF3A-208ENST00000484246 AGO3Q9H9G7 860 aaKnown RBP17.74■□□□□ 0.43
UPF3A-208ENST00000484246 LAMA3Q16787 3333 aa17.74■□□□□ 0.43
UPF3A-208ENST00000484246 TRIP12Q14669 1992 aaPredicted RBP17.73■□□□□ 0.43
UPF3A-208ENST00000484246 DGAT1O75907 488 aa17.73■□□□□ 0.43
UPF3A-208ENST00000484246 VTNP04004 478 aa17.73■□□□□ 0.43
UPF3A-208ENST00000484246 DNM2P50570 870 aa17.73■□□□□ 0.43
UPF3A-208ENST00000484246 POLGP54098 1239 aaPredicted RBP17.73■□□□□ 0.43
UPF3A-208ENST00000484246 TMEM62Q0P6H9 643 aa17.73■□□□□ 0.43
UPF3A-208ENST00000484246 DRP2Q13474 957 aa17.73■□□□□ 0.43
UPF3A-208ENST00000484246 EMC2Q15006 297 aa17.73■□□□□ 0.43
UPF3A-208ENST00000484246 XKR9Q5GH70 373 aa17.73■□□□□ 0.43
UPF3A-208ENST00000484246 FAM109BQ6ICB4 259 aaPredicted RBP17.73■□□□□ 0.43
UPF3A-208ENST00000484246 POTEGQ6S5H5 508 aa17.73■□□□□ 0.43
UPF3A-208ENST00000484246 ZNF410Q86VK4 478 aa17.73■□□□□ 0.43
UPF3A-208ENST00000484246 SNX29Q8TEQ0 813 aa17.73■□□□□ 0.43
UPF3A-208ENST00000484246 MMTAG2Q9BU76 263 aaKnown RBP17.73■□□□□ 0.43
UPF3A-208ENST00000484246 AKT3Q9Y243 479 aa17.73■□□□□ 0.43
UPF3A-208ENST00000484246 ZBBXA8MT70 800 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 ZBTB39O15060 712 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 ZSCAN22P10073 491 aaPredicted RBP17.72■□□□□ 0.43
UPF3A-208ENST00000484246 ATP2A2P16615 1042 aaKnown RBP17.72■□□□□ 0.43
UPF3A-208ENST00000484246 CCT6AP40227 531 aaKnown RBP17.72■□□□□ 0.43
UPF3A-208ENST00000484246 BECN1Q14457 450 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 KIZQ2M2Z5 673 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 ODR4Q5SWX8 454 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 KRT79Q5XKE5 535 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 TMEM40Q8WWA1 233 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 TCP11Q8WWU5 503 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 LRCH3Q96II8 777 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 SH2D3AQ9BRG2 576 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 FTHL17Q9BXU8 183 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 SUGCTQ9HAC7 445 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 ERVK-5Q9HDB9 667 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 XPNPEP1Q9NQW7 623 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 SCN5AQ14524 2016 aa17.72■□□□□ 0.43
UPF3A-208ENST00000484246 MYH9P35579 1960 aaKnown RBP17.71■□□□□ 0.43
UPF3A-208ENST00000484246 SIP14410 1827 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 EIF4BP23588 611 aaKnown RBP17.71■□□□□ 0.43
UPF3A-208ENST00000484246 KCNJ6P48051 423 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 NASPP49321 788 aaPredicted RBP17.71■□□□□ 0.43
UPF3A-208ENST00000484246 NLRP11P59045 1033 aaKnown RBP17.71■□□□□ 0.43
UPF3A-208ENST00000484246 PAK2Q13177 524 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 RAB30Q15771 203 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 HERC6Q8IVU3 1022 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 PIGOQ8TEQ8 1089 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 PSPC1Q8WXF1 523 aaKnown RBP17.71■□□□□ 0.43
UPF3A-208ENST00000484246 OSMRQ99650 979 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 MTRQ99707 1265 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 CDHR5Q9HBB8 845 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 ATP6V0A4Q9HBG4 840 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 SUCLA2Q9P2R7 463 aaPredicted RBP17.71■□□□□ 0.43
UPF3A-208ENST00000484246 PADI3Q9ULW8 664 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 CLIC4Q9Y696 253 aa17.71■□□□□ 0.43
UPF3A-208ENST00000484246 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.7■□□□□ 0.42
UPF3A-208ENST00000484246 VWA3AA6NCI4 1184 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 PP2D1A8MPX8 630 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 F13A1P00488 732 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 DARSP14868 501 aaKnown RBP17.7■□□□□ 0.42
UPF3A-208ENST00000484246 CD52P31358 61 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 LONP1P36776 959 aaKnown RBP17.7■□□□□ 0.42
UPF3A-208ENST00000484246 DEFB103AP81534 67 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 ECM1Q16610 540 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 FAM173BQ6P4H8 233 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 FAM228AQ86W67 206 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 MCPH1Q8NEM0 835 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 CCDC43Q96MW1 224 aaKnown RBP17.7■□□□□ 0.42
UPF3A-208ENST00000484246 USP28Q96RU2 1077 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 PBX4Q9BYU1 374 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms