RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ARSHQ5FYA8 562 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 MARCH8Q5T0T0 291 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 GDF6Q6KF10 455 aaPredicted RBP13.6□□□□□ -0.23
SDC1-206ENST00000482879 MTHFD1LQ6UB35 978 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 MAEAQ7L5Y9 396 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 SH3RF1Q7Z6J0 888 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 SESTD1Q86VW0 696 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 SLC43A3Q8NBI5 491 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 SLC7A3Q8WY07 619 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 PAWRQ96IZ0 340 aaKnown RBP13.6□□□□□ -0.23
SDC1-206ENST00000482879 MTRQ99707 1265 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 JPH2Q9BR39 696 aaPredicted RBP13.6□□□□□ -0.23
SDC1-206ENST00000482879 SEZ6LQ9BYH1 1024 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 C11orf49Q9H6J7 331 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 DHX33Q9H6R0 707 aaKnown RBP13.6□□□□□ -0.23
SDC1-206ENST00000482879 SUGCTQ9HAC7 445 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 ATP6V0A4Q9HBG4 840 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 KCND2Q9NZV8 630 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 GTF2IRD1Q9UHL9 959 aa13.6□□□□□ -0.23
SDC1-206ENST00000482879 HOOK1Q9UJC3 728 aaKnown RBP13.6□□□□□ -0.23
SDC1-206ENST00000482879 TREHO43280 583 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 GTPBP6O43824 516 aaPredicted RBP13.59□□□□□ -0.23
SDC1-206ENST00000482879 MAFO75444 373 aaPredicted RBP13.59□□□□□ -0.23
SDC1-206ENST00000482879 C22orf31O95567 290 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 COL6A1P12109 1028 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 HOXC8P31273 242 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 ATN1P54259 1190 aaPredicted RBP13.59□□□□□ -0.23
SDC1-206ENST00000482879 ADAM17P78536 824 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 RAD51AP2Q09MP3 1159 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 EMC2Q15006 297 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 SKOR2Q2VWA4 1001 aaPredicted RBP13.59□□□□□ -0.23
SDC1-206ENST00000482879 EFCAB12Q6NXP0 572 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 SLC39A5Q6ZMH5 540 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 DYMQ7RTS9 669 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 NECAB2Q7Z6G3 386 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 ELOA2Q8IYF1 753 aaPredicted RBP13.59□□□□□ -0.23
SDC1-206ENST00000482879 METTL13Q8N6R0 699 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 RETREG2Q8NC44 543 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 MCPH1Q8NEM0 835 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 DDX12PQ92771 950 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 ZBTB10Q96DT7 871 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 C7orf25Q9BPX7 421 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 BLZF1Q9H2G9 400 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 CLSTN2Q9H4D0 955 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 POLD4Q9HCU8 107 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 PDLIM7Q9NR12 457 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 TUBE1Q9UJT0 475 aa13.59□□□□□ -0.23
SDC1-206ENST00000482879 IGKV6-21A0A0C4DH24 114 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 MBLAC1A4D2B0 266 aaPredicted RBP13.58□□□□□ -0.24
SDC1-206ENST00000482879 TRAK2O60296 914 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 HIP1RO75146 1068 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 PRR29P0C7W0 189 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 CYP2C9P11712 490 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 GUCY2CP25092 1073 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 CASP1P29466 404 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 DNM2P50570 870 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 CDK7P50613 346 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 ASIC1P78348 528 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 MDM2Q00987 491 aaPredicted RBP13.58□□□□□ -0.24
SDC1-206ENST00000482879 CACNB1Q02641 598 aaPredicted RBP13.58□□□□□ -0.24
SDC1-206ENST00000482879 CUL4BQ13620 913 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 GIT2Q14161 759 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 POSTNQ15063 836 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 CAMK4Q16566 473 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 PTGISQ16647 500 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 FAM102BQ5T8I3 360 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 TNS4Q8IZW8 715 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 LRRC71Q8N4P6 559 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 TMEM143Q96AN5 459 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 TIPINQ9BVW5 301 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 TRIM9Q9C026 710 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 NUP62CLQ9H1M0 184 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 XPNPEP1Q9NQW7 623 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 PCDHA2Q9Y5H9 948 aa13.58□□□□□ -0.24
SDC1-206ENST00000482879 CCDC85CA6NKD9 419 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 GAS2O43903 313 aaKnown RBP13.57□□□□□ -0.24
SDC1-206ENST00000482879 FAM13AO94988 1023 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 MYL1P05976 194 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 IDEP14735 1019 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 TMOD1P28289 359 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 CLCN3P51790 818 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 SOX10P56693 466 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 PNOCQ13519 176 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 KLHL40Q2TBA0 621 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 IER5Q5VY09 327 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 CNNM4Q6P4Q7 775 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 RUFY4Q6ZNE9 571 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 TCP11Q8WWU5 503 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 DNAJC19Q96DA6 116 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 REEP2Q9BRK0 252 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 POLR3FQ9H1D9 316 aaPredicted RBP13.57□□□□□ -0.24
SDC1-206ENST00000482879 ZHX3Q9H4I2 956 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 GPRC5CQ9NQ84 441 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 TRMT13Q9NUP7 481 aaKnown RBP13.57□□□□□ -0.24
SDC1-206ENST00000482879 SUCLA2Q9P2R7 463 aaPredicted RBP13.57□□□□□ -0.24
SDC1-206ENST00000482879 NOD1Q9Y239 953 aa13.57□□□□□ -0.24
SDC1-206ENST00000482879 SMIM35A0A1B0GVV1 85 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 SFI1A8K8P3 1242 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 RSPH10B2B2RC85 870 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 TBCAO75347 108 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms