RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 PARNO95453 639 aaKnown RBP13.69□□□□□ -0.22
PTPRF-213ENST00000481019 ACTN1P12814 892 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 ATP2A2P16615 1042 aaKnown RBP13.69□□□□□ -0.22
PTPRF-213ENST00000481019 DNAJB2P25686 324 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 YWHABP31946 246 aaKnown RBP13.69□□□□□ -0.22
PTPRF-213ENST00000481019 DDIT3P35638 169 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 ORC2Q13416 577 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-213ENST00000481019 SPRED2Q7Z698 418 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 RSPH3Q86UC2 560 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 RTN4RL1Q86UN2 441 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-213ENST00000481019 CATSPER3Q86XQ3 398 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 NME8Q8N427 588 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 PIGOQ8TEQ8 1089 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 FAM161BQ96MY7 647 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 IFIH1Q9BYX4 1025 aaKnown RBP13.69□□□□□ -0.22
PTPRF-213ENST00000481019 NKX2-4Q9H2Z4 354 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 ADAMTS10Q9H324 1103 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 TMX1Q9H3N1 280 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 ZSWIM4Q9H7M6 989 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 CEP131Q9UPN4 1083 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 GINS2Q9Y248 185 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 NOC2LQ9Y3T9 749 aaKnown RBP13.69□□□□□ -0.22
PTPRF-213ENST00000481019 EYSQ5T1H1 3165 aa13.69□□□□□ -0.22
PTPRF-213ENST00000481019 KDM3AQ9Y4C1 1321 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 COL6A3P12111 3177 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 MAGEB2O15479 319 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 MAFO75444 373 aaPredicted RBP13.68□□□□□ -0.22
PTPRF-213ENST00000481019 BAIAP3O94812 1187 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 LYPLA2O95372 231 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 CDC25AP30304 524 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 FXR2P51116 673 aaKnown RBP eCLIP13.68□□□□□ -0.22
PTPRF-213ENST00000481019 TBC1D8BQ0IIM8 1120 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 IKBKEQ14164 716 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 RILPL1Q5EBL4 403 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 IER5Q5VY09 327 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 TSHZ1Q6ZSZ6 1077 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 KSR1Q8IVT5 923 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 HERC6Q8IVU3 1022 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 DEFB123Q8N688 67 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 SEPT8Q92599 483 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 CEP170P1Q96L14 293 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 OSMRQ99650 979 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 AKT3Q9Y243 479 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 TRANK1O15050 2925 aa13.68□□□□□ -0.22
PTPRF-213ENST00000481019 ABHD14A-ACY1A0A1B0GW23 586 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 LCHNA4D1U4 455 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 STX6O43752 255 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 MGEA5O60502 916 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 CSDE1O75534 798 aaKnown RBP13.67□□□□□ -0.22
PTPRF-213ENST00000481019 FGFR4P22455 802 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 NLRP11P59045 1033 aaKnown RBP13.67□□□□□ -0.22
PTPRF-213ENST00000481019 ATP2C1P98194 919 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-213ENST00000481019 GRIN1Q05586 938 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 XKR9Q5GH70 373 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 FAM117BQ6P1L5 589 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 POTEGQ6S5H5 508 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 IGSF22Q8N9C0 903 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 TMEM143Q96AN5 459 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 GBP4Q96PP9 640 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 MMTAG2Q9BU76 263 aaKnown RBP13.67□□□□□ -0.22
PTPRF-213ENST00000481019 MTIF3Q9H2K0 278 aaKnown RBP13.67□□□□□ -0.22
PTPRF-213ENST00000481019 DHX33Q9H6R0 707 aaKnown RBP13.67□□□□□ -0.22
PTPRF-213ENST00000481019 ERVK-5Q9HDB9 667 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 XPNPEP1Q9NQW7 623 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 PADI3Q9ULW8 664 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 CLIC4Q9Y696 253 aa13.67□□□□□ -0.22
PTPRF-213ENST00000481019 COL4A6Q14031 1691 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 GOLGA6L22H0YM25 854 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 ENPP3O14638 875 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 PTMSP20962 102 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 GPC3P51654 580 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 CRYBB1P53674 252 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-213ENST00000481019 PKP1Q13835 747 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 FOXD4L5Q5VV16 416 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-213ENST00000481019 GPR153Q6NV75 609 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 FAM228AQ86W67 206 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 FOXD4L4Q8WXT5 416 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-213ENST00000481019 TIFAQ96CG3 184 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 GUCD1Q96NT3 240 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 SLC9A7Q96T83 725 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 POLR3CQ9BUI4 534 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-213ENST00000481019 SEMA6BQ9H3T3 888 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 TUFT1Q9NNX1 390 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 MTMR10Q9NXD2 777 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 SUCLA2Q9P2R7 463 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-213ENST00000481019 LRWD1Q9UFC0 647 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 REV3LO60673 3130 aa13.66□□□□□ -0.22
PTPRF-213ENST00000481019 RPA1P27694 616 aa13.65□□□□□ -0.22
PTPRF-213ENST00000481019 PRPHP41219 470 aa13.65□□□□□ -0.22
PTPRF-213ENST00000481019 KCNJ6P48051 423 aa13.65□□□□□ -0.22
PTPRF-213ENST00000481019 RARRES1P49788 294 aa13.65□□□□□ -0.22
PTPRF-213ENST00000481019 EMC2Q15006 297 aa13.65□□□□□ -0.22
PTPRF-213ENST00000481019 SF3A1Q15459 793 aaKnown RBP13.65□□□□□ -0.22
PTPRF-213ENST00000481019 KCNK18Q7Z418 384 aa13.65□□□□□ -0.22
PTPRF-213ENST00000481019 BRAPQ7Z569 592 aa13.65□□□□□ -0.22
PTPRF-213ENST00000481019 MYOCDQ8IZQ8 938 aa13.65□□□□□ -0.22
PTPRF-213ENST00000481019 PHOSPHO2Q8TCD6 241 aa13.65□□□□□ -0.22
PTPRF-213ENST00000481019 NEK9Q8TD19 979 aa13.65□□□□□ -0.22
PTPRF-213ENST00000481019 ZSCAN16Q9H4T2 348 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-213ENST00000481019 ANKEF1Q9NU02 776 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms