RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 ABL2P42684 1182 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 GALCP54803 685 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 RBBP5Q15291 538 aaKnown RBP20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 CNGA2Q16280 664 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 KIAA1755Q5JYT7 1200 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 C18orf8Q96DM3 657 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 ZDHHC18Q9NUE0 388 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 ADAM22Q9P0K1 906 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 CORO1CQ9ULV4 474 aaPredicted RBP20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 MYH1P12882 1939 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 MYH4Q9Y623 1939 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 AGTP01019 485 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 CREB1P16220 341 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 DUPD1Q68J44 220 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 PIGSQ96S52 555 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 TMEM47Q9BQJ4 181 aa20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 CPSF2Q9P2I0 782 aaKnown RBP20.33■□□□□ 0.85
CCDC88B-207ENST00000479965 BTNL10A8MVZ5 291 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 E9PMD0 336 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 GNA14O95837 355 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 PLCG2P16885 1265 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 TNNI2P48788 182 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 PTENP60484 403 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 ADCY2Q08462 1091 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 LONRF1Q17RB8 773 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 ZNF34Q8IZ26 560 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 SEC14L1Q92503 715 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 CEP63Q96MT8 703 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 SLC4A9Q96Q91 983 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 TXLNGYQ9BZA5 131 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 ATP8A2Q9NTI2 1148 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 TFCP2L1Q9NZI6 479 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 PTPN22Q9Y2R2 807 aa20.33■□□□□ 0.84
CCDC88B-207ENST00000479965 ADAMTS2O95450 1211 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 LINGO3P0C6S8 592 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 ZBTB48P10074 688 aaPredicted RBP20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 PCK1P35558 622 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 POU5F1Q01860 360 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 KLRC3Q07444 240 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 BLMHQ13867 455 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 LLGL1Q15334 1064 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 BARGINQ6ZT62 677 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 TAOK1Q7L7X3 1001 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 EMILIN3Q9NT22 766 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 ALADP13716 330 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 CTCFP49711 727 aaPredicted RBP20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 EVA1CP58658 441 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 FITM2Q8N6M3 262 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 SLC35G2Q8TBE7 412 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 DNAJC19Q96DA6 116 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 NAF1Q96HR8 494 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 ETNK1Q9HBU6 452 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 ZFATQ9P243 1243 aa20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 BZW2Q9Y6E2 419 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-207ENST00000479965 DDX3XO00571 662 aaKnown RBP eCLIP20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 HIP1RO75146 1068 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 SMIM24O75264 130 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 ZNF131P52739 623 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 DCAF12L1Q5VU92 463 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 GLYCTKQ8IVS8 523 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 HES6Q96HZ4 224 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 LRRC27Q9C0I9 530 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 ARMCX3Q9UH62 379 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 STXBP5LQ9Y2K9 1186 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 DOCK2Q92608 1830 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 TNS2Q63HR2 1409 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 COL1A1P02452 1464 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 TMEM110-MUSTN1A8MSY1 372 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 RNASELQ05823 741 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 KSR1Q8IVT5 923 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 MARCH10Q8NA82 808 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 COA7Q96BR5 231 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 HOMER3Q9NSC5 361 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 RASAL2Q9UJF2 1139 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 AJAP1Q9UKB5 411 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 RPTORQ8N122 1335 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 KLRK1P26718 216 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 ICA1Q05084 483 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 BNIP1Q12981 228 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 CCDC65Q8IXS2 484 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 MTMR9Q96QG7 549 aa20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 MTRF1LQ9UGC7 380 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-207ENST00000479965 TMEM120BA0PK00 339 aa20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 LUC7L3O95232 432 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 ACSL3O95573 720 aa20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 PON1P27169 355 aa20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 ZDHHC24Q6UX98 284 aa20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 SCFD1Q8WVM8 642 aa20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 FAM84BQ96KN1 310 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 SNUPNO95149 360 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 SPATA21Q7Z572 469 aa20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 EXOC3L1Q86VI1 746 aa20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 COL23A1Q86Y22 540 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 CNKSR1Q969H4 720 aa20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 RMDN2Q96LZ7 410 aa20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 SAP30BPQ9UHR5 308 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 KIAA1024Q9UPX6 916 aa20.3■□□□□ 0.84
CCDC88B-207ENST00000479965 H0Y3Z8 333 aa20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 TULP1O00294 542 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 KIAA0391O15091 583 aaKnown RBP20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms