RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 INO80B-WBP1J3KQ70 363 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 MSH4O15457 936 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 GAS8O95995 478 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 SRGAP2CP0DJJ0 459 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 IL1R1P14778 569 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 MFAP3P55082 362 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 SLC18A3Q16572 532 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 PRPF38AQ8NAV1 312 aaKnown RBP11.94□□□□□ -0.5
COL27A1-204ENST00000477421 XXYLT1Q8NBI6 393 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 RUSC1Q9BVN2 902 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 INO80BQ9C086 356 aaPredicted RBP11.94□□□□□ -0.5
COL27A1-204ENST00000477421 HSD3B7Q9H2F3 369 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 BLOC1S4Q9NUP1 217 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 NXF1Q9UBU9 619 aaKnown RBP11.94□□□□□ -0.5
COL27A1-204ENST00000477421 MKRN1Q9UHC7 482 aaKnown RBP11.94□□□□□ -0.5
COL27A1-204ENST00000477421 NOVA2Q9UNW9 492 aaKnown RBP11.94□□□□□ -0.5
COL27A1-204ENST00000477421 PCDHB4Q9Y5E5 795 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 CSADQ9Y600 493 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 DENND3A2RUS2 1198 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 EYA4O95677 639 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 MAPK4P31152 587 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 ORC2Q13416 577 aaPredicted RBP11.94□□□□□ -0.5
COL27A1-204ENST00000477421 SNRNP48Q6IEG0 339 aaKnown RBP11.94□□□□□ -0.5
COL27A1-204ENST00000477421 DDX42Q86XP3 938 aaKnown RBP eCLIP11.94□□□□□ -0.5
COL27A1-204ENST00000477421 HEMGNQ9BXL5 484 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 FUT8Q9BYC5 575 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 TMEM206Q9H813 350 aa11.94□□□□□ -0.5
COL27A1-204ENST00000477421 DMGDHQ9UI17 866 aaKnown RBP11.94□□□□□ -0.5
COL27A1-204ENST00000477421 RRP15Q9Y3B9 282 aaKnown RBP11.94□□□□□ -0.5
COL27A1-204ENST00000477421 XRN1Q8IZH2 1706 aaKnown RBP11.93□□□□□ -0.5
COL27A1-204ENST00000477421 PSMD14O00487 310 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 FTLP02792 175 aaPredicted RBP11.93□□□□□ -0.5
COL27A1-204ENST00000477421 RPA1P27694 616 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 QARSP47897 775 aaKnown RBP11.93□□□□□ -0.5
COL27A1-204ENST00000477421 TFAMQ00059 246 aaKnown RBP11.93□□□□□ -0.5
COL27A1-204ENST00000477421 SWSAP1Q6NVH7 229 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 B4GALNT4Q76KP1 1039 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 RTKN2Q8IZC4 609 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 FAM213AQ9BRX8 229 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 RNF146Q9NTX7 359 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 GOLGA8SH3BPF8 625 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 KRT14P02533 472 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 EAPPQ56P03 285 aaPredicted RBP11.93□□□□□ -0.5
COL27A1-204ENST00000477421 PLA2G4FQ68DD2 849 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 CYP4F22Q6NT55 531 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 HAUS6Q7Z4H7 955 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 PNMA8AQ86V59 439 aaPredicted RBP11.93□□□□□ -0.5
COL27A1-204ENST00000477421 DNAJC7Q99615 494 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 AS3MTQ9HBK9 375 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 ZNF446Q9NWS9 450 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 GABBR1Q9UBS5 961 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 ZNF148Q9UQR1 794 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 KRT15P19012 456 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 IFT88Q13099 833 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 ZNF772Q68DY9 489 aaPredicted RBP11.93□□□□□ -0.5
COL27A1-204ENST00000477421 APOBEC3HQ6NTF7 200 aaKnown RBP11.93□□□□□ -0.5
COL27A1-204ENST00000477421 SCARA5Q6ZMJ2 495 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 IQCGQ9H095 443 aaKnown RBP11.93□□□□□ -0.5
COL27A1-204ENST00000477421 STMN4Q9H169 189 aaPredicted RBP11.93□□□□□ -0.5
COL27A1-204ENST00000477421 NKIRAS1Q9NYS0 192 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 TBK1Q9UHD2 729 aa11.93□□□□□ -0.5
COL27A1-204ENST00000477421 POLRMTO00411 1230 aaKnown RBP11.92□□□□□ -0.5
COL27A1-204ENST00000477421 EPHB6O15197 1021 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 EVI5O60447 810 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 COPB2P35606 906 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 HMGCS2P54868 508 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 MTMR2Q13614 643 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 MTMR3Q13615 1198 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 SCFD1Q8WVM8 642 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 MED15Q96RN5 788 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 KIFC3Q9BVG8 833 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 VPS37BQ9H9H4 285 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 ZNF70Q9UC06 446 aaPredicted RBP11.92□□□□□ -0.5
COL27A1-204ENST00000477421 HERC5Q9UII4 1024 aaKnown RBP11.92□□□□□ -0.5
COL27A1-204ENST00000477421 PLAAQ9Y263 795 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 K7ERI5 159 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 PDXKO00764 312 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 P4HBP07237 508 aaKnown RBP11.92□□□□□ -0.5
COL27A1-204ENST00000477421 CARSP49589 748 aaKnown RBP11.92□□□□□ -0.5
COL27A1-204ENST00000477421 VAMP7P51809 220 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 RPUSD2Q8IZ73 545 aaKnown RBP11.92□□□□□ -0.5
COL27A1-204ENST00000477421 RNF10Q8N5U6 811 aaKnown RBP11.92□□□□□ -0.5
COL27A1-204ENST00000477421 ELMO3Q96BJ8 720 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 NSRP1Q9H0G5 558 aaKnown RBP11.92□□□□□ -0.5
COL27A1-204ENST00000477421 INTS2Q9H0H0 1204 aaKnown RBP11.92□□□□□ -0.5
COL27A1-204ENST00000477421 CAPN7Q9Y6W3 813 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 DAPK3O43293 454 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 GALCP54803 685 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 ZBTB16Q05516 673 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 KCNA1Q09470 495 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 MKRN3Q13064 507 aaKnown RBP11.92□□□□□ -0.5
COL27A1-204ENST00000477421 EMBQ6PCB8 327 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 MAK16Q9BXY0 300 aaKnown RBP11.92□□□□□ -0.5
COL27A1-204ENST00000477421 RNF14Q9UBS8 474 aa11.92□□□□□ -0.5
COL27A1-204ENST00000477421 KIF13AQ9H1H9 1805 aa11.91□□□□□ -0.5
COL27A1-204ENST00000477421 THAP12O43422 761 aa11.91□□□□□ -0.5
COL27A1-204ENST00000477421 SASH3O75995 380 aa11.91□□□□□ -0.5
COL27A1-204ENST00000477421 TM4SF1P30408 202 aa11.91□□□□□ -0.5
COL27A1-204ENST00000477421 DYNLT1P63172 113 aa11.91□□□□□ -0.5
COL27A1-204ENST00000477421 DR1Q01658 176 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms