RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 LIMCH1Q9UPQ0 1083 aa3.8□□□□□ -1.8
UBR3-208ENST00000474426 ROCK2O75116 1388 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 TNIKQ9UKE5 1360 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 WDR19Q8NEZ3 1342 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 PRR5-ARHGAP8B1AHC4 643 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 K7EPI3 171 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ENC1O14682 589 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 FSCN2O14926 492 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 TNFRSF21O75509 655 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ABLIM3O94929 683 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ZFYP08048 801 aaPredicted RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 THEGLP0DJG4 465 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 POU2F1P14859 743 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 PDGFRAP16234 1089 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 JAK1P23458 1154 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 AXLP30530 894 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 FXR1P51114 621 aaKnown RBP eCLIP3.79□□□□□ -1.8
UBR3-208ENST00000474426 SLC8A3P57103 927 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 MRPS15P82914 257 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 NFKB2Q00653 900 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 AIMP1Q12904 312 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 KRT32Q14532 448 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 CEP55Q53EZ4 464 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 CEP78Q5JTW2 689 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 TRAPPC3LQ5T215 181 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 B3GNT6Q6ZMB0 384 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 BNIPLQ7Z465 357 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 GALNTL5Q7Z4T8 443 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 GAS2L3Q86XJ1 694 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 WDR49Q8IV35 697 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 SLC22A9Q8IVM8 553 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ZBTB44Q8NCP5 570 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 LILRB4Q8NHJ6 448 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 TRPM4Q8TD43 1214 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 SUCLG2Q96I99 432 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 SIN3AQ96ST3 1273 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 BCL7BQ9BQE9 202 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 YIPF4Q9BSR8 244 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 LSM14BQ9BX40 385 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 NAA15Q9BXJ9 866 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 USP26Q9BXU7 913 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ADNPQ9H2P0 1102 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 SIRPGQ9P1W8 387 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 TRHDEQ9UKU6 1024 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ZMYND8Q9ULU4 1186 aaPredicted RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 JAG2Q9Y219 1238 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 R3HDM2Q9Y2K5 976 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 PCDHB12Q9Y5F1 795 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 SESN1Q9Y6P5 492 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ABCC11Q96J66 1382 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 TRIM43BA6NCK2 446 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 GOLGA6L10A6NI86 522 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ALDH2P05091 517 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 POLR3DP05423 398 aaPredicted RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 RARGP13631 454 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ATP1A3P13637 1013 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 VAV1P15498 845 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ALOX12P18054 663 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 GBP2P32456 591 aaPredicted RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 GRIK1P39086 918 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 MTIF2P46199 727 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 CUL2Q13617 745 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 GEN1Q17RS7 908 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 RNASEH2BQ5TBB1 312 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 AGMOQ6ZNB7 445 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 TTLL7Q6ZT98 887 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 OSCARQ8IYS5 282 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 CELF2-AS1Q8N7Q2 184 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ZBTB38Q8NAP3 1195 aaPredicted RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 FBXO15Q8NCQ5 510 aaPredicted RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 TOR1AIP2Q8NFQ8 470 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 BCAS4Q8TDM0 211 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 CRB3Q9BUF7 120 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ZWILCHQ9H900 591 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 RSAD1Q9HA92 442 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 TMEM5Q9Y2B1 443 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 CRYL1Q9Y2S2 319 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 TTC41PQ6P2S7 1318 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 GOLGA6L7A0A1B0GV03 622 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 GOLGA8IPA6NC78 632 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 SGK1O00141 431 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 CYTH3O43739 400 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 DKC1O60832 514 aaKnown RBP eCLIP3.79□□□□□ -1.8
UBR3-208ENST00000474426 PALMO75781 387 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 GLRX3O76003 335 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 URODP06132 367 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 WEE2P0C1S8 567 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 EPB41P11171 864 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 COL6A2P12110 1019 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 STMN1P16949 149 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 NAGAP17050 411 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 MX2P20592 715 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 CFL1P23528 166 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 CPA2P48052 419 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 POU3F4P49335 361 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 BLVRAP53004 296 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 SLC26A5P58743 744 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 RPP38P78345 283 aaKnown RBP3.79□□□□□ -1.8
UBR3-208ENST00000474426 ERCC6LQ2NKX8 1250 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 Q3ZCU0 254 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms