RNA–Protein interactions for RNA: ENST00000474412.1

VPS50-211, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-211ENST00000474412 MIGA1Q8NAN2 632 aa8.45□□□□□ -1.06
VPS50-211ENST00000474412 PI4K2BQ8TCG2 481 aa8.45□□□□□ -1.06
VPS50-211ENST00000474412 YTHDC1Q96MU7 727 aaKnown RBP8.45□□□□□ -1.06
VPS50-211ENST00000474412 TRIM17Q9Y577 477 aa8.45□□□□□ -1.06
VPS50-211ENST00000474412 KIAA0100Q14667 2235 aaKnown RBP8.44□□□□□ -1.06
VPS50-211ENST00000474412 SMARCA5O60264 1052 aaPredicted RBP8.44□□□□□ -1.06
VPS50-211ENST00000474412 IDH1O75874 414 aaKnown RBP8.44□□□□□ -1.06
VPS50-211ENST00000474412 VAMP1P23763 118 aa8.44□□□□□ -1.06
VPS50-211ENST00000474412 GTF2A2P52657 109 aa8.44□□□□□ -1.06
VPS50-211ENST00000474412 JAG1P78504 1218 aa8.44□□□□□ -1.06
VPS50-211ENST00000474412 CCDC158Q5M9N0 1113 aa8.44□□□□□ -1.06
VPS50-211ENST00000474412 CBLL1Q75N03 491 aa8.44□□□□□ -1.06
VPS50-211ENST00000474412 SCYL3Q8IZE3 742 aa8.44□□□□□ -1.06
VPS50-211ENST00000474412 ZNF512BQ96KM6 892 aaPredicted RBP8.44□□□□□ -1.06
VPS50-211ENST00000474412 SAP30BPQ9UHR5 308 aaKnown RBP8.44□□□□□ -1.06
VPS50-211ENST00000474412 SCAMP3O14828 347 aaKnown RBP8.43□□□□□ -1.06
VPS50-211ENST00000474412 GSTO1P78417 241 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 ZP2Q05996 745 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 PPATQ06203 517 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 SNAPC2Q13487 334 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 ZNF394Q53GI3 561 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 TSHZ3Q63HK5 1081 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 FBXO46Q6PJ61 603 aaPredicted RBP8.43□□□□□ -1.06
VPS50-211ENST00000474412 GK5Q6ZS86 529 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 MAGEB6Q8N7X4 407 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 BAHD1Q8TBE0 780 aaPredicted RBP8.43□□□□□ -1.06
VPS50-211ENST00000474412 PPP1R13LQ8WUF5 828 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 TGFBRAP1Q8WUH2 860 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 NKD1Q969G9 470 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 MRRFQ96E11 262 aaKnown RBP8.43□□□□□ -1.06
VPS50-211ENST00000474412 CCDC74BQ96LY2 380 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 DNAJC2Q99543 621 aaKnown RBP8.43□□□□□ -1.06
VPS50-211ENST00000474412 NT5C1AQ9BXI3 368 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 RC3H2Q9HBD1 1191 aaKnown RBP8.43□□□□□ -1.06
VPS50-211ENST00000474412 SEMA3GQ9NS98 782 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 CPA4Q9UI42 421 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 PCDHGB7Q9Y5F8 929 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 PDE4DIPQ5VU43 2346 aa8.43□□□□□ -1.06
VPS50-211ENST00000474412 TRIM75PA6NK02 468 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 DNAJA2O60884 412 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 LDHCP07864 332 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 CYP2C8P10632 490 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 CETPP11597 493 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 INHBEP58166 350 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 SP3Q02447 781 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 TNK2Q07912 1038 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 ERC1Q8IUD2 1116 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 RPAP2Q8IXW5 612 aaPredicted RBP8.42□□□□□ -1.06
VPS50-211ENST00000474412 HOOK2Q96ED9 719 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 KIF1BPQ96EK5 621 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 KIF2CQ99661 725 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.42□□□□□ -1.06
VPS50-211ENST00000474412 ATP13A1Q9HD20 1204 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 ZSWIM5Q9P217 1185 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 PALD1Q9ULE6 856 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 ST14Q9Y5Y6 855 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 PTCH2Q9Y6C5 1203 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 ZNF236Q9UL36 1845 aa8.42□□□□□ -1.06
VPS50-211ENST00000474412 MCM3APO60318 1980 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 LCTP09848 1927 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 A0A0G2JLL6 359 aaPredicted RBP8.41□□□□□ -1.06
VPS50-211ENST00000474412 SMIM22K7EJ46 135 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 PDHXO00330 501 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 GOLIM4O00461 696 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 RNASE1P07998 156 aaKnown RBP8.41□□□□□ -1.06
VPS50-211ENST00000474412 RAG1P15918 1043 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 PDE6AP16499 860 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 GBP1P32455 592 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 ZNF165P49910 485 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 RRP1P56182 461 aaKnown RBP8.41□□□□□ -1.06
VPS50-211ENST00000474412 ARSHQ5FYA8 562 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 TREML2Q5T2D2 321 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 GADL1Q6ZQY3 521 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 THAP5Q7Z6K1 395 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 PRRT2Q7Z6L0 340 aaPredicted RBP8.41□□□□□ -1.06
VPS50-211ENST00000474412 LCORLQ8N3X6 602 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 RGS22Q8NE09 1264 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 PIWIL2Q8TC59 973 aaKnown RBP8.41□□□□□ -1.06
VPS50-211ENST00000474412 RIOK1Q9BRS2 568 aaKnown RBP8.41□□□□□ -1.06
VPS50-211ENST00000474412 PRDM7Q9NQW5 492 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 MBNL3Q9NUK0 354 aaKnown RBP8.41□□□□□ -1.06
VPS50-211ENST00000474412 GMIPQ9P107 970 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 ADAMTS6Q9UKP5 1117 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 KCNH3Q9ULD8 1083 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 AFG3L2Q9Y4W6 797 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 ZHX2Q9Y6X8 837 aa8.41□□□□□ -1.06
VPS50-211ENST00000474412 ZNF532Q9HCE3 1301 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 TCRBV5S4A2TA0A5A2 114 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 RBAK-RBAKDNI3L0D1 243 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 PAX4O43316 350 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 TLR2O60603 784 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 PEX10O60683 326 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 HMMRO75330 724 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 ATE1O95260 518 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 RGS19P49795 217 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 LACTBP83111 547 aaPredicted RBP8.4□□□□□ -1.06
VPS50-211ENST00000474412 CLCQ05315 142 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 OTUD7BQ6GQQ9 843 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 OVOS1Q6IE37 1185 aa8.4□□□□□ -1.06
VPS50-211ENST00000474412 SLC23A3Q6PIS1 610 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms