RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 KIAA0319LQ8IZA0 1049 aa10.68□□□□□ -0.7
VCL-204ENST00000472585 CCDC82Q8N4S0 544 aa10.68□□□□□ -0.7
VCL-204ENST00000472585 MAP4K1Q92918 833 aa10.68□□□□□ -0.7
VCL-204ENST00000472585 CUL5Q93034 780 aa10.68□□□□□ -0.7
VCL-204ENST00000472585 PGBD1Q96JS3 809 aa10.68□□□□□ -0.7
VCL-204ENST00000472585 MAP3K14Q99558 947 aa10.68□□□□□ -0.7
VCL-204ENST00000472585 CWH43Q9H720 699 aa10.68□□□□□ -0.7
VCL-204ENST00000472585 ERVK-5Q9HDB9 667 aa10.68□□□□□ -0.7
VCL-204ENST00000472585 NCOR2Q9Y618 2525 aa10.68□□□□□ -0.7
VCL-204ENST00000472585 KDM3AQ9Y4C1 1321 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 IGKV6D-21A0A0A0MT36 114 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 SMIM35A0A1B0GVV1 85 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 ERICH2A1L162 156 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 C9IYK1 514 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 ADAMTS3O15072 1205 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 SGSM2O43147 1006 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 BRD1O95696 1058 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 HOXB8P17481 243 aaPredicted RBP10.67□□□□□ -0.7
VCL-204ENST00000472585 ATP4AP20648 1035 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 SARSP49591 514 aaKnown RBP10.67□□□□□ -0.7
VCL-204ENST00000472585 ACTR2P61160 394 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 FAM189BP81408 668 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 IER5Q5VY09 327 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 CES5AQ6NT32 575 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 LRRC55Q6ZSA7 311 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 THNSL1Q8IYQ7 743 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 FLCNQ8NFG4 579 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 FEZF2Q8TBJ5 459 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 MXRA8Q9BRK3 442 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 RYDENQ9NUL5 291 aaKnown RBP10.67□□□□□ -0.7
VCL-204ENST00000472585 RNF19AQ9NV58 838 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 TYW1Q9NV66 732 aaKnown RBP10.67□□□□□ -0.7
VCL-204ENST00000472585 TMEM260Q9NX78 707 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 SLC9A2Q9UBY0 812 aa10.67□□□□□ -0.7
VCL-204ENST00000472585 TBKBP1A7MCY6 615 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 HIDE1A8MVS5 230 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 M0QZ92 97 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 SH2B2O14492 632 aaPredicted RBP10.66□□□□□ -0.7
VCL-204ENST00000472585 MAFGO15525 162 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 KRT37O76014 449 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 FGF18O76093 207 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 DDAH1O94760 285 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 RPLP2P05387 115 aaKnown RBP10.66□□□□□ -0.7
VCL-204ENST00000472585 FGFR1P11362 822 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 KLRC1P26715 233 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 STAT5BP51692 787 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 KRT76Q01546 638 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 NFX1Q12986 1120 aaKnown RBP10.66□□□□□ -0.7
VCL-204ENST00000472585 PAK2Q13177 524 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 TPRNQ4KMQ1 711 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 LLGL2Q6P1M3 1020 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 ABHD15Q6UXT9 468 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 TMEM184AQ6ZMB5 413 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 PLPPR4Q7Z2D5 763 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 RALYLQ86SE5 291 aaKnown RBP10.66□□□□□ -0.7
VCL-204ENST00000472585 RMDN1Q96DB5 314 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 CDHR1Q96JP9 859 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 ADAM2Q99965 735 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 HINFPQ9BQA5 517 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 SMOC2Q9H3U7 446 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 JPH1Q9HDC5 661 aaPredicted RBP10.66□□□□□ -0.7
VCL-204ENST00000472585 RGS18Q9NS28 235 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 PUF60Q9UHX1 559 aaKnown RBP10.66□□□□□ -0.7
VCL-204ENST00000472585 ST3GAL5Q9UNP4 418 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 PCDHB7Q9Y5E2 793 aa10.66□□□□□ -0.7
VCL-204ENST00000472585 FNDC1Q4ZHG4 1894 aaPredicted RBP10.66□□□□□ -0.7
VCL-204ENST00000472585 CEP250Q9BV73 2442 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 MEIS1O00470 390 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 DHX15O43143 795 aaKnown RBP10.65□□□□□ -0.7
VCL-204ENST00000472585 PRC1O43663 620 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 PBX3P40426 434 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 FUT2Q10981 343 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 DSC3Q14574 896 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 PUM1Q14671 1186 aaKnown RBP eCLIP10.65□□□□□ -0.7
VCL-204ENST00000472585 PLPP4Q5VZY2 271 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 KIAA2013Q8IYS2 634 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 NME8Q8N427 588 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 COLGALT1Q8NBJ5 622 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 CTCFLQ8NI51 663 aaPredicted RBP10.65□□□□□ -0.7
VCL-204ENST00000472585 NECTIN4Q96NY8 510 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 PPP1R16BQ96T49 567 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 LZTS2Q9BRK4 669 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 LRRC2Q9BYS8 371 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 SEMA4AQ9H3S1 761 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 AGO4Q9HCK5 861 aaKnown RBP10.65□□□□□ -0.7
VCL-204ENST00000472585 ENTPD7Q9NQZ7 604 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 GINS2Q9Y248 185 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 RBM8AQ9Y5S9 174 aaKnown RBP10.65□□□□□ -0.7
VCL-204ENST00000472585 KMT2BQ9UMN6 2715 aaPredicted RBP10.65□□□□□ -0.7
VCL-204ENST00000472585 ACACBO00763 2458 aa10.65□□□□□ -0.7
VCL-204ENST00000472585 NFASCO94856 1347 aa10.64□□□□□ -0.71
VCL-204ENST00000472585 FRYLO94915 3013 aa10.64□□□□□ -0.71
VCL-204ENST00000472585 C2CD4DB7Z1M9 353 aa10.64□□□□□ -0.71
VCL-204ENST00000472585 GPR32O75388 356 aa10.64□□□□□ -0.71
VCL-204ENST00000472585 RPS6KA5O75582 802 aa10.64□□□□□ -0.71
VCL-204ENST00000472585 LMNAP02545 664 aaKnown RBP10.64□□□□□ -0.71
VCL-204ENST00000472585 KIF5BP33176 963 aa10.64□□□□□ -0.71
VCL-204ENST00000472585 ITIH3Q06033 890 aa10.64□□□□□ -0.71
VCL-204ENST00000472585 AAMPQ13685 434 aa10.64□□□□□ -0.71
VCL-204ENST00000472585 SART3Q15020 963 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms