RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	LRSAM1	Q6UWE0	723 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	SYDE1	Q6ZW31	735 aa	Predicted RBP	5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	FNIP1	Q8TF40	1166 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	JDP2	Q8WYK2	163 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	SSH1	Q8WYL5	1049 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	RPGR	Q92834	1020 aa	Known RBP	5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	ZBTB8A	Q96BR9	441 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	CAMKK2	Q96RR4	588 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	PPP1R16B	Q96T49	567 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	ANO3	Q9BYT9	981 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	TCF7L1	Q9HCS4	588 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	PMF1-BGLAP	U3KQ54	211 aa		5.17	□□□□□ -1.58
PTCD3-209	ENST00000472044	KNG1	P01042	644 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	MYBL2	P10244	700 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	COL6A1	P12109	1028 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	LIMS1	P48059	325 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	MRPS9	P82933	396 aa	Known RBP	5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	NOLC1	Q14978	699 aa	Known RBP eCLIP	5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	NFE2	Q16621	373 aa	Predicted RBP	5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	PTPN21	Q16825	1174 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	ABCB5	Q2M3G0	1257 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	PITRM1	Q5JRX3	1037 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	UNQ6494/PRO21346	Q6UXR6	183 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	KCNK18	Q7Z418	384 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	STK32C	Q86UX6	486 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	ZBTB46	Q86UZ6	589 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	SLC41A1	Q8IVJ1	513 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	STPG3	Q8N7X2	389 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	SMAD5	Q99717	465 aa	Known RBP	5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	TACO1	Q9BSH4	297 aa	Known RBP	5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	HAPLN2	Q9GZV7	340 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	SPATA6	Q9NWH7	488 aa	Predicted RBP	5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	KCMF1	Q9P0J7	381 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	FBXO10	Q9UK96	956 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044	MYPN	Q86TC9	1320 aa		5.16	□□□□□ -1.58
PTCD3-209	ENST00000472044		A0A0A6YYJ9	748 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	ST20-MTHFS	A0A0A6YYL1	179 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	H2AFY	O75367	372 aa	Known RBP	5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	MTHFD2	P13995	350 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	RPL13	P26373	211 aa	Known RBP	5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	GLRB	P48167	497 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	GPR15	P49685	360 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	DLX2	Q07687	328 aa	Predicted RBP	5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	UGT8	Q16880	541 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	CCDC178	Q5BJE1	867 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	CT83	Q5H943	113 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	PGM2L1	Q6PCE3	622 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	BMP8A	Q7Z5Y6	402 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	SAPCD2	Q86UD0	394 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	LYSMD2	Q8IV50	215 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	POU5F2	Q8N7G0	328 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	WDR48	Q8TAF3	677 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	FERMT2	Q96AC1	680 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	EAF2	Q96CJ1	260 aa	Predicted RBP	5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	RAX2	Q96IS3	184 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	ZSWIM3	Q96MP5	696 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	CD320	Q9NPF0	282 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	ZNF277	Q9NRM2	450 aa	Predicted RBP	5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	CCM2L	Q9NUG4	571 aa	Predicted RBP	5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	G3BP2	Q9UN86	482 aa	Known RBP	5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	EID1	Q9Y6B2	187 aa		5.15	□□□□□ -1.59
PTCD3-209	ENST00000472044	SH3D21	A4FU49	640 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	AKAP10	O43572	662 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PCDHGA12	O60330	932 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	CUTA	O60888	179 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	OPHN1	O60890	802 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	ABLIM3	O94929	683 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	APOL3	O95236	402 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PARN	O95453	639 aa	Known RBP	5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	TSPAN15	O95858	294 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	MT-CO1	P00395	513 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	CLEC2L	P0C7M8	214 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	ZNF28	P17035	718 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	IL13	P35225	146 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	MTNR1B	P49286	362 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	RAB27A	P51159	221 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	MLLT6	P55198	1093 aa	Predicted RBP	5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	CD83	Q01151	205 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	MAP3K12	Q12852	859 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	SMAD4	Q13485	552 aa	Known RBP	5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PIN1	Q13526	163 aa	Predicted RBP	5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	SSPN	Q14714	243 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PCBP2	Q15366	365 aa	Known RBP eCLIP	5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	VWA3B	Q502W6	1294 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	TMEM240	Q5SV17	173 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PHF19	Q5T6S3	580 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	TMEM200B	Q69YZ2	307 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	GRAMD4	Q6IC98	578 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	CCDC62	Q6P9F0	684 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	CNKSR3	Q6P9H4	555 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	ATG14	Q6ZNE5	492 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	TTLL7	Q6ZT98	887 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	AMOTL1	Q8IY63	956 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	RAVER1	Q8IY67	606 aa	Known RBP	5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	HOOK2	Q96ED9	719 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	FMNL2	Q96PY5	1086 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	MTG2	Q9H4K7	406 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	MKS1	Q9NXB0	559 aa		5.14	□□□□□ -1.59

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