RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 TGFB2P61812 414 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 MAP3K12Q12852 859 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 SQSTM1Q13501 440 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 TESK1Q15569 626 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 TARBP2Q15633 366 aaKnown RBP5.71□□□□□ -1.5
VPS13A-210ENST00000471439 NTRK3Q16288 839 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 FOXB2Q5VYV0 432 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 USP53Q70EK8 1073 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 B3GNT8Q7Z7M8 397 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 STK32CQ86UX6 486 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 DCP2Q8IU60 420 aaKnown RBP5.71□□□□□ -1.5
VPS13A-210ENST00000471439 TMEM151BQ8IW70 566 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 ZDHHC14Q8IZN3 488 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 LINC01356Q8N9X3 169 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 TRMT2BQ96GJ1 504 aaKnown RBP5.71□□□□□ -1.5
VPS13A-210ENST00000471439 RNF38Q9H0F5 515 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 XYLT2Q9H1B5 865 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 ADAM7Q9H2U9 754 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 NUDT5Q9UKK9 219 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 X6R8D5 127 aa5.71□□□□□ -1.5
VPS13A-210ENST00000471439 CACNA1BQ00975 2339 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 TLDC2A0PJX2 215 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 PRODHO43272 600 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 CPP00450 1065 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 DPEP1P16444 411 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 STAT5AP42229 794 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 SMAD4Q13485 552 aaKnown RBP5.7□□□□□ -1.5
VPS13A-210ENST00000471439 LILRA6Q6PI73 481 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 KCNT2Q6UVM3 1135 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 OSBP2Q969R2 916 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 TMEM169Q96HH4 297 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 CHAMP1Q96JM3 812 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 SPATA9Q9BWV2 254 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 EPN3Q9H201 632 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 CDIP1Q9H305 208 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 NPFFR2Q9Y5X5 522 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 PTCH2Q9Y6C5 1203 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 KDM6AO15550 1401 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-210ENST00000471439 IFT172Q9UG01 1749 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 EYSQ5T1H1 3165 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 CENPFP49454 3210 aa5.7□□□□□ -1.5
VPS13A-210ENST00000471439 COL5A2P05997 1499 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-210ENST00000471439 ANKRD30BQ9BXX2 1392 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 PRUNE2Q8WUY3 3088 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 LY75O60449 1722 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 ESYT3A0FGR9 886 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 H0YGN5 161 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 AGRPO00253 132 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 CACNB2Q08289 660 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-210ENST00000471439 MAP4K2Q12851 820 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 C2orf27AQ580R0 203 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 IQCEQ6IPM2 695 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 SDE2Q6IQ49 451 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 SAPCD2Q86UD0 394 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 GORASP1Q9BQQ3 440 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 SPATA25Q9BR10 227 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 AARSD1Q9BTE6 412 aaKnown RBP5.69□□□□□ -1.5
VPS13A-210ENST00000471439 PHF20Q9BVI0 1012 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 AP5M1Q9H0R1 490 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 CLDND1Q9NY35 253 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 STXBP5LQ9Y2K9 1186 aa5.69□□□□□ -1.5
VPS13A-210ENST00000471439 TMA7Q9Y2S6 64 aaKnown RBP5.69□□□□□ -1.5
VPS13A-210ENST00000471439 ITSN1Q15811 1721 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 MUC6Q6W4X9 2439 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 MYO1BO43795 1136 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 KCNA3P22001 575 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 SLC9A5Q14940 896 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 MILR1Q7Z6M3 343 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 CTU1Q7Z7A3 348 aaKnown RBP5.68□□□□□ -1.5
VPS13A-210ENST00000471439 RIOX2Q8IUF8 465 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 FAM177A1Q8N128 213 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-210ENST00000471439 ARRDC4Q8NCT1 418 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 KCTD13Q8WZ19 329 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 SEC14L1Q92503 715 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 ZNF669Q96BR6 464 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-210ENST00000471439 ZBTB8AQ96BR9 441 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 JAM3Q9BX67 310 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 RRP7BPQ9NSQ0 103 aa5.68□□□□□ -1.5
VPS13A-210ENST00000471439 SPATA6Q9NWH7 488 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-210ENST00000471439 PAPPA2Q9BXP8 1791 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 EXOC5O00471 708 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 PABPC1P11940 636 aaKnown RBP5.67□□□□□ -1.5
VPS13A-210ENST00000471439 SLC6A11P48066 632 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 SLURP1P55000 103 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 CTSWP56202 376 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 LSAMPQ13449 338 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 HSP90AA2PQ14568 343 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-210ENST00000471439 MROH9Q5TGP6 573 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 LIPIQ6XZB0 460 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 ETV3LQ6ZN32 361 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 MIB1Q86YT6 1006 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 RBM12BQ8IXT5 1001 aaKnown RBP5.67□□□□□ -1.5
VPS13A-210ENST00000471439 THAP3Q8WTV1 239 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-210ENST00000471439 CPA5Q8WXQ8 436 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 EXOC2Q96KP1 924 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 CCDC140Q96MF4 163 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 FANCLQ9NW38 375 aa5.67□□□□□ -1.5
VPS13A-210ENST00000471439 EEA1Q15075 1411 aa5.66□□□□□ -1.5
VPS13A-210ENST00000471439 CYP2C8P10632 490 aa5.66□□□□□ -1.5
VPS13A-210ENST00000471439 TKFCQ3LXA3 575 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms