RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CLDN23Q96B33 292 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 MYADMQ96S97 322 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 DDX23Q9BUQ8 820 aaKnown RBP6.26□□□□□ -1.41
HMGB1-207ENST00000468384 ABHD16BQ9H3Z7 469 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 SLC32A1Q9H598 525 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 LRRC4CQ9HCJ2 640 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 VPS45Q9NRW7 570 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 PLEKHB1Q9UF11 243 aaPredicted RBP6.26□□□□□ -1.41
HMGB1-207ENST00000468384 MIA3Q5JRA6 1907 aa6.26□□□□□ -1.41
HMGB1-207ENST00000468384 NBASA2RRP1 2371 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 ATAD5Q96QE3 1844 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.25□□□□□ -1.41
HMGB1-207ENST00000468384 E9PSI1 815 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 DYNC1LI2O43237 492 aaPredicted RBP6.25□□□□□ -1.41
HMGB1-207ENST00000468384 CFBP00751 764 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 VCAM1P19320 739 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 MCAMP43121 646 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 NR5A1Q13285 461 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 PTPN14Q15678 1187 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 ZYXQ15942 572 aaKnown RBP6.25□□□□□ -1.41
HMGB1-207ENST00000468384 ZNF423Q2M1K9 1284 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 ATAT1Q5SQI0 421 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 TMEM63BQ5T3F8 832 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 KIAA1841Q6NSI8 718 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 LYPD8Q6UX82 237 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 KLHL23Q8NBE8 558 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 CCDC191Q8NCU4 936 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 DBF4BQ8NFT6 615 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 GPR20Q99678 358 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 OXCT2Q9BYC2 517 aaPredicted RBP6.25□□□□□ -1.41
HMGB1-207ENST00000468384 DDX4Q9NQI0 724 aaKnown RBP6.25□□□□□ -1.41
HMGB1-207ENST00000468384 SEPT3Q9UH03 358 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 HEMK1Q9Y5R4 338 aaPredicted RBP6.25□□□□□ -1.41
HMGB1-207ENST00000468384 TRIP12Q14669 1992 aaPredicted RBP6.25□□□□□ -1.41
HMGB1-207ENST00000468384 MED13LQ71F56 2210 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 ADGRA3Q8IWK6 1321 aa6.25□□□□□ -1.41
HMGB1-207ENST00000468384 AFPP02771 609 aaKnown RBP6.24□□□□□ -1.41
HMGB1-207ENST00000468384 ARHGAP4P98171 946 aa6.24□□□□□ -1.41
HMGB1-207ENST00000468384 RBL2Q08999 1139 aa6.24□□□□□ -1.41
HMGB1-207ENST00000468384 PICALMQ13492 652 aa6.24□□□□□ -1.41
HMGB1-207ENST00000468384 MBTPS1Q14703 1052 aa6.24□□□□□ -1.41
HMGB1-207ENST00000468384 PPP2R5DQ14738 602 aa6.24□□□□□ -1.41
HMGB1-207ENST00000468384 SHROOM1Q2M3G4 852 aaPredicted RBP6.24□□□□□ -1.41
HMGB1-207ENST00000468384 ZBTB41Q5SVQ8 909 aa6.24□□□□□ -1.41
HMGB1-207ENST00000468384 NFRKBQ6P4R8 1299 aa6.24□□□□□ -1.41
HMGB1-207ENST00000468384 DHX38Q92620 1227 aaKnown RBP6.24□□□□□ -1.41
HMGB1-207ENST00000468384 CASP10Q92851 521 aa6.24□□□□□ -1.41
HMGB1-207ENST00000468384 TMEM9BQ9NQ34 198 aa6.24□□□□□ -1.41
HMGB1-207ENST00000468384 CWC25Q9NXE8 425 aaPredicted RBP6.24□□□□□ -1.41
HMGB1-207ENST00000468384 HOXC10Q9NYD6 342 aa6.24□□□□□ -1.41
HMGB1-207ENST00000468384 NOVA2Q9UNW9 492 aaKnown RBP6.24□□□□□ -1.41
HMGB1-207ENST00000468384 ZNFX1Q9P2E3 1918 aaKnown RBP6.24□□□□□ -1.41
HMGB1-207ENST00000468384 ASCC3Q8N3C0 2202 aaKnown RBP6.23□□□□□ -1.41
HMGB1-207ENST00000468384 APCP25054 2843 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 COL6A5A8TX70 2615 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.23□□□□□ -1.41
HMGB1-207ENST00000468384 CHURC1-FNTBB4DL54 471 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 GNB5O14775 395 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 PLIN1O60240 522 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 IGSF3O75054 1194 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 CKBP12277 381 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 MPLP40238 635 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 RPS9P46781 194 aaKnown RBP6.23□□□□□ -1.41
HMGB1-207ENST00000468384 FNTBP49356 437 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 PTPN11Q06124 597 aaPredicted RBP6.23□□□□□ -1.41
HMGB1-207ENST00000468384 COG2Q14746 738 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 PTGISQ16647 500 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 UAP1L1Q3KQV9 507 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 RARS2Q5T160 578 aaKnown RBP6.23□□□□□ -1.41
HMGB1-207ENST00000468384 MAGEB6Q8N7X4 407 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 MB21D1Q8N884 522 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 FAM174AQ8TBP5 190 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 MED8Q96G25 268 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 CTAGE1Q96RT6 745 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 RPAP3Q9H6T3 665 aaPredicted RBP6.23□□□□□ -1.41
HMGB1-207ENST00000468384 SLC2A4RGQ9NR83 387 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 PCDHGA5Q9Y5G8 931 aa6.23□□□□□ -1.41
HMGB1-207ENST00000468384 LNP1A1A4G5 178 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 U2SURPO15042 1029 aaKnown RBP6.22□□□□□ -1.41
HMGB1-207ENST00000468384 SLC25A27O95847 323 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 F12P00748 615 aaPredicted RBP6.22□□□□□ -1.41
HMGB1-207ENST00000468384 C8AP07357 584 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 SKIP12755 728 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 RAP1GAPP47736 663 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 PURAQ00577 322 aaKnown RBP6.22□□□□□ -1.41
HMGB1-207ENST00000468384 RHDQ02161 417 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 CBLBQ13191 982 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 SNW1Q13573 536 aaKnown RBP6.22□□□□□ -1.41
HMGB1-207ENST00000468384 BTG3Q14201 252 aaPredicted RBP6.22□□□□□ -1.41
HMGB1-207ENST00000468384 B4GALNT3Q6L9W6 998 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 LRRC69Q6ZNQ3 347 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 DEPDC4Q8N2C3 294 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 C12orf76Q8N812 135 aaPredicted RBP6.22□□□□□ -1.41
HMGB1-207ENST00000468384 FEZ1Q99689 392 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 KATNBL1Q9H079 304 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 RC3H2Q9HBD1 1191 aaKnown RBP6.22□□□□□ -1.41
HMGB1-207ENST00000468384 LTB4R2Q9NPC1 389 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 FKBPLQ9UIM3 349 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 PLXNB3Q9ULL4 1909 aa6.22□□□□□ -1.41
HMGB1-207ENST00000468384 RP1L1Q8IWN7 2480 aaPredicted RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms