RNA–Protein interactions for RNA: ENST00000467852.1

VPS26A-204, Transcript of VPS26, retromer complex component A, human

TSL 3

Gene VPS26A, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS26A-204	ENST00000467852	SLC22A17	Q8WUG5	538 aa		13.59	□□□□□ -0.23
VPS26A-204	ENST00000467852	MAP4K1	Q92918	833 aa		13.59	□□□□□ -0.23
VPS26A-204	ENST00000467852	ATP6V0A4	Q9HBG4	840 aa		13.59	□□□□□ -0.23
VPS26A-204	ENST00000467852	C1orf112	Q9NSG2	853 aa		13.59	□□□□□ -0.23
VPS26A-204	ENST00000467852	TUBE1	Q9UJT0	475 aa		13.59	□□□□□ -0.23
VPS26A-204	ENST00000467852	ABCB11	O95342	1321 aa		13.59	□□□□□ -0.23
VPS26A-204	ENST00000467852	DOCK8	Q8NF50	2099 aa		13.59	□□□□□ -0.23
VPS26A-204	ENST00000467852	DENND3	A2RUS2	1198 aa		13.58	□□□□□ -0.24
VPS26A-204	ENST00000467852	NMT2	O60551	498 aa		13.58	□□□□□ -0.24
VPS26A-204	ENST00000467852	N4BP1	O75113	896 aa	Known RBP	13.58	□□□□□ -0.24
VPS26A-204	ENST00000467852	IFIT2	P09913	472 aa	Known RBP	13.58	□□□□□ -0.24
VPS26A-204	ENST00000467852	NFX1	Q12986	1120 aa	Known RBP	13.58	□□□□□ -0.24
VPS26A-204	ENST00000467852	CLASRP	Q8N2M8	674 aa	Known RBP	13.58	□□□□□ -0.24
VPS26A-204	ENST00000467852	FEZF2	Q8TBJ5	459 aa		13.58	□□□□□ -0.24
VPS26A-204	ENST00000467852	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS26A-204	ENST00000467852	TMX1	Q9H3N1	280 aa		13.58	□□□□□ -0.24
VPS26A-204	ENST00000467852	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS26A-204	ENST00000467852	TRPV2	Q9Y5S1	764 aa		13.58	□□□□□ -0.24
VPS26A-204	ENST00000467852	MYH6	P13533	1939 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	WDFY3	Q8IZQ1	3526 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	NCAM2	O15394	837 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	GNAT2	P19087	354 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	PBX3	P40426	434 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	PRKCQ	Q04759	706 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	SLFN5	Q08AF3	891 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	FOXC1	Q12948	553 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	PPFIA1	Q13136	1202 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	SNW1	Q13573	536 aa	Known RBP	13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	PPP2R5D	Q14738	602 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	ZBTB41	Q5SVQ8	909 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	SLC24A5	Q71RS6	500 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	TRIM50	Q86XT4	487 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	CLUAP1	Q96AJ1	413 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	DACH1	Q9UI36	760 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	EXOC6B	Q9Y2D4	811 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	MTF2	Q9Y483	593 aa	Predicted RBP	13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	IGSF9B	Q9UPX0	1349 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	DOCK5	Q9H7D0	1870 aa		13.57	□□□□□ -0.24
VPS26A-204	ENST00000467852	ITPR1	Q14643	2758 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	IGSF10	Q6WRI0	2623 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	LOC400499	M0QZD8	3231 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	IPO8	O15397	1037 aa	Known RBP	13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	SIM2	Q14190	667 aa	Predicted RBP	13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	NEDD9	Q14511	834 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	C12orf50	Q8NA57	414 aa	Predicted RBP	13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	KLHL5	Q96PQ7	755 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	ADAM2	Q99965	735 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	PDCD2L	Q9BRP1	358 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	DDX23	Q9BUQ8	820 aa	Known RBP	13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	LSM14B	Q9BX40	385 aa	Known RBP	13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	NACAP1	Q9BZK3	213 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	TMEM117	Q9H0C3	514 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	FAM49A	Q9H0Q0	323 aa	Predicted RBP	13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	PRMT8	Q9NR22	394 aa	Predicted RBP	13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	RGS18	Q9NS28	235 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	RXFP3	Q9NSD7	469 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	GREB1	Q4ZG55	1949 aa		13.56	□□□□□ -0.24
VPS26A-204	ENST00000467852	MBLAC1	A4D2B0	266 aa	Predicted RBP	13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	TTLL13P	A6NNM8	815 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	CYSRT1	A8MQ03	144 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	PATL2	C9JE40	543 aa	Known RBP	13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	HOXA2	O43364	376 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	CFB	P00751	764 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	FGFR1	P11362	822 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	MLF2	Q15773	248 aa	Predicted RBP	13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	GRIK4	Q16099	956 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	HSP90AB4P	Q58FF6	505 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	PSAPL1	Q6NUJ1	521 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	METTL7B	Q6UX53	244 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	LRRC55	Q6ZSA7	311 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	CYFIP1	Q7L576	1253 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	VSIG10L	Q86VR7	867 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	LURAP1L	Q8IV03	231 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	IFNL3	Q8IZI9	196 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	VPS52	Q8N1B4	723 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	SLC39A11	Q8N1S5	342 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	LRRC43	Q8N309	656 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	RHPN1	Q8TCX5	695 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	GATA6	Q92908	595 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	NELL2	Q99435	816 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	CELF4	Q9BZC1	486 aa	Known RBP	13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	BCL11A	Q9H165	835 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	BCAS3	Q9H6U6	928 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	C1orf115	Q9H7X2	142 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	WDR6	Q9NNW5	1121 aa	Known RBP	13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	TMEM161A	Q9NX61	479 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	MRPL11	Q9Y3B7	192 aa	Known RBP	13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852	IRAK3	Q9Y616	596 aa		13.55	□□□□□ -0.24
VPS26A-204	ENST00000467852		C9IYK1	514 aa		13.54	□□□□□ -0.24
VPS26A-204	ENST00000467852	RANBP6	O60518	1105 aa	Known RBP	13.54	□□□□□ -0.24
VPS26A-204	ENST00000467852	TOP1	P11387	765 aa	Known RBP	13.54	□□□□□ -0.24
VPS26A-204	ENST00000467852	ATP5J	P18859	108 aa		13.54	□□□□□ -0.24
VPS26A-204	ENST00000467852	SPINK2	P20155	84 aa		13.54	□□□□□ -0.24
VPS26A-204	ENST00000467852	NOV	P48745	357 aa		13.54	□□□□□ -0.24
VPS26A-204	ENST00000467852	PPARA	Q07869	468 aa		13.54	□□□□□ -0.24
VPS26A-204	ENST00000467852	TMEM62	Q0P6H9	643 aa		13.54	□□□□□ -0.24
VPS26A-204	ENST00000467852	TMEM266	Q2M3C6	531 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms