RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 MCM4P33991 863 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 POLGP54098 1239 aaPredicted RBP16.9■□□□□ 0.3
NPHP4-205ENST00000466897 CHMP4BP1P59074 171 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 MLLT1Q03111 559 aaPredicted RBP16.9■□□□□ 0.3
NPHP4-205ENST00000466897 SNW1Q13573 536 aaKnown RBP16.9■□□□□ 0.3
NPHP4-205ENST00000466897 PADI6Q6TGC4 694 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 C1orf186Q6ZWK4 172 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 TRMT1LQ7Z2T5 733 aaKnown RBP16.9■□□□□ 0.3
NPHP4-205ENST00000466897 RPAINQ86UA6 219 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 ZNF710Q8N1W2 664 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 MCPH1Q8NEM0 835 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 DHX58Q96C10 678 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 TIGD1Q96MW7 591 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 CTAGE1Q96RT6 745 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 LRRC27Q9C0I9 530 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 ATP6V0A4Q9HBG4 840 aa16.9■□□□□ 0.3
NPHP4-205ENST00000466897 SMIM35A0A1B0GVV1 85 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 TLR3O15455 904 aaKnown RBP16.89■□□□□ 0.29
NPHP4-205ENST00000466897 TREHO43280 583 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 B4GALT4O60513 344 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 CAND2O75155 1236 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 ZNF202O95125 648 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 MYL1P05976 194 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 IGBP1P78318 339 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 RBL2Q08999 1139 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 PTK7Q13308 1070 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 MCM6Q14566 821 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 EMC2Q15006 297 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 PTGISQ16647 500 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 RINT1Q6NUQ1 792 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 CNNM4Q6P4Q7 775 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 SV2BQ7L1I2 683 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 ELOA2Q8IYF1 753 aaPredicted RBP16.89■□□□□ 0.29
NPHP4-205ENST00000466897 CEP57L1Q8IYX8 460 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 TRAPPC12Q8WVT3 735 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 CCDC34Q96HJ3 373 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 MTRQ99707 1265 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 PANK2Q9BZ23 570 aa16.89■□□□□ 0.29
NPHP4-205ENST00000466897 MKI67P46013 3256 aaKnown RBP16.89■□□□□ 0.29
NPHP4-205ENST00000466897 A0A087WWV3 80 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 DCDC2CA8MYV0 355 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 PTMSP20962 102 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 TMOD1P28289 359 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 ATN1P54259 1190 aaPredicted RBP16.88■□□□□ 0.29
NPHP4-205ENST00000466897 RTP1P59025 263 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 AMPD3Q01432 767 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 LRRC26Q2I0M4 334 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 TRIM60Q495X7 471 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 LONRF3Q496Y0 759 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 KANK3Q6NY19 840 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 KRBA2Q6ZNG9 492 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 NME8Q8N427 588 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 TCP11Q8WWU5 503 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 SH2D3AQ9BRG2 576 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 XPNPEP1Q9NQW7 623 aa16.88■□□□□ 0.29
NPHP4-205ENST00000466897 TRMT13Q9NUP7 481 aaKnown RBP16.88■□□□□ 0.29
NPHP4-205ENST00000466897 USO1O60763 962 aaKnown RBP16.87■□□□□ 0.29
NPHP4-205ENST00000466897 CYP2C9P11712 490 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 LIG1P18858 919 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 DNM2P50570 870 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 ZNF200P98182 395 aaPredicted RBP16.87■□□□□ 0.29
NPHP4-205ENST00000466897 ARSHQ5FYA8 562 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 IER5Q5VY09 327 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 EFCAB12Q6NXP0 572 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 SH3RF1Q7Z6J0 888 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 GPBP1Q86WP2 473 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 CAGE1Q8TC20 777 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 PPP1R13LQ8WUF5 828 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 RUSC1Q9BVN2 902 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 SERTAD1Q9UHV2 236 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 ODF2LQ9ULJ1 636 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 NOD1Q9Y239 953 aa16.87■□□□□ 0.29
NPHP4-205ENST00000466897 LTBP2Q14767 1821 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 PQBP1O60828 265 aaKnown RBP16.86■□□□□ 0.29
NPHP4-205ENST00000466897 NR1I2O75469 434 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 MBD3O95983 291 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 SSBP05455 408 aaKnown RBP eCLIP16.86■□□□□ 0.29
NPHP4-205ENST00000466897 CDC42EP1Q00587 391 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 TLE2Q04725 743 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 RSPH3Q86UC2 560 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 KIAA0319LQ8IZA0 1049 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 CCDC155Q8N6L0 562 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 CNNM3Q8NE01 707 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 KIFAP3Q92845 792 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 DRC1Q96MC2 740 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 HTATIP2Q9BUP3 242 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 TRPV6Q9H1D0 765 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 C17orf75Q9HAS0 396 aa16.86■□□□□ 0.29
NPHP4-205ENST00000466897 BMP2KQ9NSY1 1161 aaPredicted RBP16.86■□□□□ 0.29
NPHP4-205ENST00000466897 MYMKA6NI61 221 aa16.85■□□□□ 0.29
NPHP4-205ENST00000466897 PITPNM1O00562 1244 aa16.85■□□□□ 0.29
NPHP4-205ENST00000466897 ASAP2O43150 1006 aa16.85■□□□□ 0.29
NPHP4-205ENST00000466897 KINO60870 393 aaKnown RBP16.85■□□□□ 0.29
NPHP4-205ENST00000466897 CLTBP09497 229 aa16.85■□□□□ 0.29
NPHP4-205ENST00000466897 ARL2P36404 184 aa16.85■□□□□ 0.29
NPHP4-205ENST00000466897 ZNF131P52739 623 aa16.85■□□□□ 0.29
NPHP4-205ENST00000466897 FAAP100Q0VG06 881 aa16.85■□□□□ 0.29
NPHP4-205ENST00000466897 MKRN4PQ13434 485 aaPredicted RBP16.85■□□□□ 0.29
NPHP4-205ENST00000466897 MXD4Q14582 209 aaPredicted RBP16.85■□□□□ 0.29
NPHP4-205ENST00000466897 TRIM71Q2Q1W2 868 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms