RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 CXCL10P02778 98 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 SPATA31C1P0DKV0 1188 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 MARCKSP29966 332 aaPredicted RBP13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 CD52P31358 61 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 PRPHP41219 470 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 KCNJ6P48051 423 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 DNM2P50570 870 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 NLRP11P59045 1033 aaKnown RBP13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 ATP2C1P98194 919 aaPredicted RBP13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 MGAT3Q09327 533 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 IKBKEQ14164 716 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 LPIN1Q14693 890 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 FAM26DQ5JW98 314 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 KRT79Q5XKE5 535 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 FAM117BQ6P1L5 589 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 CNKSR3Q6P9H4 555 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 MAEAQ7L5Y9 396 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 TMCO2Q7Z6W1 182 aaPredicted RBP13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 NLRP7Q8WX94 980 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 SLC7A3Q8WY07 619 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 TMEM143Q96AN5 459 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 OSMRQ99650 979 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 IFIH1Q9BYX4 1025 aaKnown RBP13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 ZSCAN16Q9H4T2 348 aaPredicted RBP13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 TUFT1Q9NNX1 390 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 TFIP11Q9UBB9 837 aaKnown RBP13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 KIAA1024Q9UPX6 916 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 GBF1Q92538 1859 aa13.44□□□□□ -0.26
SHROOM3-202ENST00000466541 MAFO75444 373 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 RPLP2P05387 115 aaKnown RBP13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 ZSCAN22P10073 491 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 RPA1P27694 616 aa13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 RABGGTBP53611 331 aa13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 NFX1Q12986 1120 aaKnown RBP13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 PDIA5Q14554 519 aa13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 ECM1Q16610 540 aa13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 FBXO47Q5MNV8 452 aa13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 HAUS3Q68CZ6 603 aa13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 RPAINQ86UA6 219 aa13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 RHPN2Q8IUC4 686 aa13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 KSR1Q8IVT5 923 aa13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 CEP89Q96ST8 783 aa13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 POLR3CQ9BUI4 534 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 AGO3Q9H9G7 860 aaKnown RBP13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 DDX19AQ9NUU7 478 aaKnown RBP13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 SUCLA2Q9P2R7 463 aaPredicted RBP13.43□□□□□ -0.26
SHROOM3-202ENST00000466541 LAMA3Q16787 3333 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 USO1O60763 962 aaKnown RBP13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 GPR32O75388 356 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 CSDE1O75534 798 aaKnown RBP13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 UPP2O95045 317 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 BMP15O95972 392 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 SRGAP2CP0DJJ0 459 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 ATP2A2P16615 1042 aaKnown RBP13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 FXR1P51114 621 aaKnown RBP eCLIP13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 GRIN1Q05586 938 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 PAK2Q13177 524 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 MKRN4PQ13434 485 aaPredicted RBP13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 EMC2Q15006 297 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 LRIT3Q3SXY7 679 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 PLEKHG4Q58EX7 1191 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 SPECC1Q5M775 1068 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 TSHZ1Q6ZSZ6 1077 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 MYOCDQ8IZQ8 938 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 IGSF22Q8N9C0 903 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 RASSF8Q8NHQ8 419 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 NLRP4Q96MN2 994 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 NACC1Q96RE7 527 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 USP28Q96RU2 1077 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 MTRQ99707 1265 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 JPH2Q9BR39 696 aaPredicted RBP13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 ANKEF1Q9NU02 776 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 NOC2LQ9Y3T9 749 aaKnown RBP13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 MICAL3Q7RTP6 2002 aa13.42□□□□□ -0.26
SHROOM3-202ENST00000466541 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 ARHGEF35A5YM69 484 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 RPS6KA5O75582 802 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 BAIAP3O94812 1187 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 LYPLA2O95372 231 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 F13A1P00488 732 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 SSBP05455 408 aaKnown RBP eCLIP13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 MYOGP15173 224 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 FGFR4P22455 802 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 PBX2P40425 430 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 RFC5P40937 340 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 RARRES1P49788 294 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 CRYBB1P53674 252 aaPredicted RBP13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 WDR5P61964 334 aaKnown RBP13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 DEFB103AP81534 67 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 STK38Q15208 465 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 RASIP1Q5U651 963 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 ARL6IP4Q66PJ3 421 aaKnown RBP13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 LINC01465Q8N7H1 131 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 TMEM40Q8WWA1 233 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 CDK5RAP3Q96JB5 506 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 FAM161BQ96MY7 647 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 ZNF396Q96N95 335 aaPredicted RBP13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 ZBED2Q9BTP6 218 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms