RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 GYG2O15488 501 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 TRPA1O75762 1119 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 UBXN2AP68543 259 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 KLHL38Q2WGJ6 581 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 CRLF3Q8IUI8 442 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 NME8Q8N427 588 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 TTC13Q8NBP0 860 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 ALKQ9UM73 1620 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 PPEF1O14829 653 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 SRGNP10124 158 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 SLC24A3Q9HC58 644 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 SAYSD1Q9NPB0 183 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 USP31Q70CQ4 1352 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 SLC16A2P36021 539 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 DPYDQ12882 1025 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 JADE1Q6IE81 842 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 ABTB1Q969K4 478 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 CDHR1Q96JP9 859 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 WNT8AQ9H1J5 351 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 SMYD2Q9NRG4 433 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 BYSLQ13895 437 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 BHMT2Q9H2M3 363 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 BARHL2Q9NY43 387 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 ZFP69BQ9UJL9 534 aa20.38■□□□□ 0.85
CCDC88B-204ENST00000463837 ERFEQ4G0M1 354 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 METTL13Q8N6R0 699 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 LRRC1Q9BTT6 524 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 ZBTB17Q13105 803 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 DYNC1I2Q13409 638 aaKnown RBP20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 KNOP1Q1ED39 458 aaKnown RBP20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 BBS9Q3SYG4 887 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 STAG2Q8N3U4 1231 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 KCTD6Q8NC69 237 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 SLC7A3Q8WY07 619 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 PPWD1Q96BP3 646 aaKnown RBP20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 LRRC37BQ96QE4 947 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 CCSER1Q9C0I3 900 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 WDR70Q9NW82 654 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 FBXL5Q9UKA1 691 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 DDX47Q9H0S4 455 aaKnown RBP20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 SEPT9Q9UHD8 586 aaPredicted RBP20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 FMR1Q06787 632 aaKnown RBP eCLIP20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 TXNRD1Q16881 649 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 SUPT20HL1Q3ZLR7 823 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 DCAF4Q8WV16 495 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 RFFLQ8WZ73 363 aa20.37■□□□□ 0.85
CCDC88B-204ENST00000463837 ZNF609O15014 1411 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 ORC4O43929 436 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 HNRNPCL1O60812 293 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 SERPINB2P05120 415 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 CC2D2BQ6DHV5 1058 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 FAM47EQ6ZV65 393 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 ARHGAP18Q8N392 663 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 IRX2Q9BZI1 471 aaPredicted RBP20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 ECT2Q9H8V3 914 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 TOM1L1O75674 476 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 ZNF473Q8WTR7 871 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 FAM20AQ96MK3 541 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 SEL1LQ9UBV2 794 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 CHGBP05060 677 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 TRAIPQ9BWF2 469 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 AGTP01019 485 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 STAT2P52630 851 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 AGBL2Q5U5Z8 902 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 WDR75Q8IWA0 830 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 ADSSL1Q8N142 457 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 MAML1Q92585 1016 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 SUGCTQ9HAC7 445 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 BATF3Q9NR55 127 aa20.36■□□□□ 0.85
CCDC88B-204ENST00000463837 PALM3A6NDB9 673 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 GOLGA8SH3BPF8 625 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 MIS18BP1Q6P0N0 1132 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 RBM43Q6ZSC3 357 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 RAPH1Q70E73 1250 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 CYTH2Q99418 400 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 MED10Q9BTT4 135 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 CNOT8Q9UFF9 292 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 GSG1L2A8MUP6 293 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 ZRANB2O95218 330 aaKnown RBP eCLIP20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 MDM2Q00987 491 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 KCTD2Q14681 263 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 FRMD5Q7Z6J6 570 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 RAB44Q7Z6P3 723 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 SFR1Q86XK3 245 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 ENGASEQ8NFI3 743 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 TMEM47Q9BQJ4 181 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 MGEA5O60502 916 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 KRT27Q7Z3Y8 459 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 NCAPG2Q86XI2 1143 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 CXorf38Q8TB03 319 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 TULP4Q9NRJ4 1543 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 HAUS5O94927 633 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 BRAFP15056 766 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 SRRM1Q8IYB3 904 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 TGS1Q96RS0 853 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 NCAPGQ9BPX3 1015 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 YIPF3Q9GZM5 350 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 TLK1Q9UKI8 766 aa20.35■□□□□ 0.85
CCDC88B-204ENST00000463837 A0A1W2PQJ5 194 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms