RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 AGXT2Q9BYV1 514 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 CLEC1BQ9P126 229 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 TCEAL9Q9UHQ7 104 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 PCDHA10Q9Y5I2 948 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 EDIL3O43854 480 aa18.23■□□□□ 0.51
COL7A1-204ENST00000462475 FGFR1P11362 822 aa18.23■□□□□ 0.51
COL7A1-204ENST00000462475 AKAP17AQ02040 695 aaKnown RBP18.23■□□□□ 0.51
COL7A1-204ENST00000462475 ODR4Q5SWX8 454 aa18.23■□□□□ 0.51
COL7A1-204ENST00000462475 SPOUT1Q5T280 376 aaKnown RBP18.23■□□□□ 0.51
COL7A1-204ENST00000462475 RBM23Q86U06 439 aaKnown RBP18.23■□□□□ 0.51
COL7A1-204ENST00000462475 FBXL16Q8N461 479 aa18.23■□□□□ 0.51
COL7A1-204ENST00000462475 EFHBQ8N7U6 833 aa18.23■□□□□ 0.51
COL7A1-204ENST00000462475 SLC26A6Q9BXS9 759 aa18.23■□□□□ 0.51
COL7A1-204ENST00000462475 RNF26Q9BY78 433 aaPredicted RBP18.23■□□□□ 0.51
COL7A1-204ENST00000462475 NCOA5Q9HCD5 579 aaKnown RBP18.23■□□□□ 0.51
COL7A1-204ENST00000462475 VPS54Q9P1Q0 977 aa18.23■□□□□ 0.51
COL7A1-204ENST00000462475 SAMM50Q9Y512 469 aa18.23■□□□□ 0.51
COL7A1-204ENST00000462475 ZNF862O60290 1169 aa18.22■□□□□ 0.51
COL7A1-204ENST00000462475 GLP2RO95838 553 aa18.22■□□□□ 0.51
COL7A1-204ENST00000462475 HOXD11P31277 338 aaPredicted RBP18.22■□□□□ 0.51
COL7A1-204ENST00000462475 DSC3Q14574 896 aa18.22■□□□□ 0.51
COL7A1-204ENST00000462475 FAM43BQ6ZT52 329 aaPredicted RBP18.22■□□□□ 0.51
COL7A1-204ENST00000462475 LRRC71Q8N4P6 559 aa18.22■□□□□ 0.51
COL7A1-204ENST00000462475 LINC01465Q8N7H1 131 aa18.22■□□□□ 0.51
COL7A1-204ENST00000462475 CCDC148Q8NFR7 591 aa18.22■□□□□ 0.51
COL7A1-204ENST00000462475 BICD2Q8TD16 824 aa18.22■□□□□ 0.51
COL7A1-204ENST00000462475 POP1Q99575 1024 aaKnown RBP18.22■□□□□ 0.51
COL7A1-204ENST00000462475 TYW1Q9NV66 732 aaKnown RBP18.22■□□□□ 0.51
COL7A1-204ENST00000462475 BARX2Q9UMQ3 279 aaPredicted RBP18.22■□□□□ 0.51
COL7A1-204ENST00000462475 CEP131Q9UPN4 1083 aa18.22■□□□□ 0.51
COL7A1-204ENST00000462475 PCDHB12Q9Y5F1 795 aa18.22■□□□□ 0.51
COL7A1-204ENST00000462475 TRIOO75962 3097 aa18.22■□□□□ 0.51
COL7A1-204ENST00000462475 PLXNA4Q9HCM2 1894 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 WDR64B1ANS9 1081 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 MSH4O15457 936 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 FGF18O76093 207 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 EYA4O95677 639 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 IFNAR1P17181 557 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 CCT2P78371 535 aaKnown RBP18.21■□□□□ 0.51
COL7A1-204ENST00000462475 FAM189BP81408 668 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 UGCGQ16739 394 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 CSPP1Q1MSJ5 1256 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 COLGALT1Q8NBJ5 622 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 SMRP1Q8NCR6 262 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 GJA10Q969M2 543 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 ZNF668Q96K58 619 aaPredicted RBP18.21■□□□□ 0.51
COL7A1-204ENST00000462475 FAM167AQ96KS9 214 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 ADAMTS10Q9H324 1103 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 ATP6V0A4Q9HBG4 840 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 DISC1Q9NRI5 854 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 TMEM161AQ9NX61 479 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 MUTYHQ9UIF7 546 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 AKT3Q9Y243 479 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 MUC6Q6W4X9 2439 aa18.21■□□□□ 0.51
COL7A1-204ENST00000462475 MAGEB2O15479 319 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 CHMP2AO43633 222 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 OATP04181 439 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 PDIA3P30101 505 aaKnown RBP18.2■□□□□ 0.5
COL7A1-204ENST00000462475 NLRP11P59045 1033 aaKnown RBP18.2■□□□□ 0.5
COL7A1-204ENST00000462475 RBM10P98175 930 aaKnown RBP18.2■□□□□ 0.5
COL7A1-204ENST00000462475 PRKCEQ02156 737 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 UBE3AQ05086 875 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 EFCAB12Q6NXP0 572 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 THNSL1Q8IYQ7 743 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 CCDC136Q96JN2 1154 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 MAP7D2Q96T17 732 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 UPF3BQ9BZI7 483 aaKnown RBP18.2■□□□□ 0.5
COL7A1-204ENST00000462475 CWH43Q9H720 699 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 ELAC1Q9H777 363 aaKnown RBP18.2■□□□□ 0.5
COL7A1-204ENST00000462475 TLE6Q9H808 572 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 TLR9Q9NR96 1032 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 AAASQ9NRG9 546 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 RNF19AQ9NV58 838 aa18.2■□□□□ 0.5
COL7A1-204ENST00000462475 RNF216Q9NWF9 866 aaPredicted RBP18.2■□□□□ 0.5
COL7A1-204ENST00000462475 FNDC1Q4ZHG4 1894 aaPredicted RBP18.2■□□□□ 0.5
COL7A1-204ENST00000462475 PER2O15055 1255 aa18.19■□□□□ 0.5
COL7A1-204ENST00000462475 ERVFC1P60507 584 aa18.19■□□□□ 0.5
COL7A1-204ENST00000462475 COASYQ13057 564 aa18.19■□□□□ 0.5
COL7A1-204ENST00000462475 RNF135Q8IUD6 432 aa18.19■□□□□ 0.5
COL7A1-204ENST00000462475 VN1R2Q8NFZ6 395 aa18.19■□□□□ 0.5
COL7A1-204ENST00000462475 MICAL1Q8TDZ2 1067 aa18.19■□□□□ 0.5
COL7A1-204ENST00000462475 EVPLQ92817 2033 aa18.19■□□□□ 0.5
COL7A1-204ENST00000462475 UNC45AQ9H3U1 944 aa18.19■□□□□ 0.5
COL7A1-204ENST00000462475 GAS7O60861 476 aa18.18■□□□□ 0.5
COL7A1-204ENST00000462475 PSMA5P28066 241 aa18.18■□□□□ 0.5
COL7A1-204ENST00000462475 TMOD1P28289 359 aa18.18■□□□□ 0.5
COL7A1-204ENST00000462475 EVCP57679 992 aa18.18■□□□□ 0.5
COL7A1-204ENST00000462475 NLRP5P59047 1200 aa18.18■□□□□ 0.5
COL7A1-204ENST00000462475 HERC4Q5GLZ8 1057 aaPredicted RBP18.18■□□□□ 0.5
COL7A1-204ENST00000462475 LRCH2Q5VUJ6 765 aa18.18■□□□□ 0.5
COL7A1-204ENST00000462475 LRRC55Q6ZSA7 311 aa18.18■□□□□ 0.5
COL7A1-204ENST00000462475 SLC5A5Q92911 643 aa18.18■□□□□ 0.5
COL7A1-204ENST00000462475 RIT2Q99578 217 aa18.18■□□□□ 0.5
COL7A1-204ENST00000462475 TMEM117Q9H0C3 514 aa18.18■□□□□ 0.5
COL7A1-204ENST00000462475 USP15Q9Y4E8 981 aaPredicted RBP18.18■□□□□ 0.5
COL7A1-204ENST00000462475 WDFY4Q6ZS81 3184 aa18.18■□□□□ 0.5
COL7A1-204ENST00000462475 FSCN2O14926 492 aa18.17■□□□□ 0.5
COL7A1-204ENST00000462475 LAG3P18627 525 aa18.17■□□□□ 0.5
COL7A1-204ENST00000462475 EIF4BP23588 611 aaKnown RBP18.17■□□□□ 0.5
COL7A1-204ENST00000462475 GPC3P51654 580 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms