RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 LMBR1Q8WVP7 490 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 ASPSCR1Q9BZE9 553 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 CCDC8Q9H0W5 538 aaPredicted RBP5.64□□□□□ -1.51
VPS41-210ENST00000462429 SEMA4AQ9H3S1 761 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 L2HGDHQ9H9P8 463 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 SPATA6Q9NWH7 488 aaPredicted RBP5.64□□□□□ -1.51
VPS41-210ENST00000462429 SPEF1Q9Y4P9 236 aa5.64□□□□□ -1.51
VPS41-210ENST00000462429 SH3D21A4FU49 640 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 ELL2O00472 640 aaPredicted RBP5.63□□□□□ -1.51
VPS41-210ENST00000462429 KNG1P01042 644 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 S100BP04271 92 aaPredicted RBP5.63□□□□□ -1.51
VPS41-210ENST00000462429 IL13P35225 146 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 AFF3P51826 1226 aaKnown RBP5.63□□□□□ -1.51
VPS41-210ENST00000462429 MANFP55145 182 aaKnown RBP5.63□□□□□ -1.51
VPS41-210ENST00000462429 NOLC1Q14978 699 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS41-210ENST00000462429 PDCD1Q15116 288 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 FSCN1Q16658 493 aaKnown RBP5.63□□□□□ -1.51
VPS41-210ENST00000462429 PLEKHG6Q3KR16 790 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 VWA3BQ502W6 1294 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 KANK2Q63ZY3 851 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 GRAMD4Q6IC98 578 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 OTOP2Q7RTS6 562 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 DACT3Q96B18 629 aaPredicted RBP5.63□□□□□ -1.51
VPS41-210ENST00000462429 SMAD5Q99717 465 aaKnown RBP5.63□□□□□ -1.51
VPS41-210ENST00000462429 ANO3Q9BYT9 981 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 IRF2BPLQ9H1B7 796 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 FTSJ1Q9UET6 329 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 PPP2R3BQ9Y5P8 575 aa5.63□□□□□ -1.51
VPS41-210ENST00000462429 SHTN1A0MZ66 631 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 DDX3XO00571 662 aaKnown RBP eCLIP5.62□□□□□ -1.51
VPS41-210ENST00000462429 GABRDO14764 452 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 NUAK1O60285 661 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 CFBP00751 764 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 MYBL2P10244 700 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 ZNF28P17035 718 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 ENPP1P22413 925 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 SARSP49591 514 aaKnown RBP5.62□□□□□ -1.51
VPS41-210ENST00000462429 MLLT6P55198 1093 aaPredicted RBP5.62□□□□□ -1.51
VPS41-210ENST00000462429 CD83Q01151 205 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 MOGSQ13724 837 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 UGT8Q16880 541 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 ZBTB41Q5SVQ8 909 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 CIAPIN1Q6FI81 312 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 CCDC62Q6P9F0 684 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 AMOTL1Q8IY63 956 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 ZNF526Q8TF50 670 aaPredicted RBP5.62□□□□□ -1.51
VPS41-210ENST00000462429 RSAD2Q8WXG1 361 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 ZCCHC14Q8WYQ9 949 aaKnown RBP5.62□□□□□ -1.51
VPS41-210ENST00000462429 MTG2Q9H4K7 406 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 METTL14Q9HCE5 456 aaKnown RBP5.62□□□□□ -1.51
VPS41-210ENST00000462429 KCMF1Q9P0J7 381 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 SYNPO2Q9UMS6 1093 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 NUMBLQ9Y6R0 609 aa5.62□□□□□ -1.51
VPS41-210ENST00000462429 A0A0G2JNJ9 132 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 PRSS38A1L453 326 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 CUTAO60888 179 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 ALDH1L1O75891 902 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 CLEC2LP0C7M8 214 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 COL6A1P12109 1028 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 IARSP41252 1262 aaKnown RBP5.61□□□□□ -1.51
VPS41-210ENST00000462429 DLX2Q07687 328 aaPredicted RBP5.61□□□□□ -1.51
VPS41-210ENST00000462429 DGKDQ16760 1214 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 INAVAQ3KP66 663 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 CT83Q5H943 113 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 ODR4Q5SWX8 454 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 TCERG1LQ5VWI1 586 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 UNQ6494/PRO21346Q6UXR6 183 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 BMP8AQ7Z5Y6 402 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 MYPNQ86TC9 1320 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 CMIPQ8IY22 773 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 IFNL2Q8IZJ0 200 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 CBARPQ8N350 705 aaPredicted RBP5.61□□□□□ -1.51
VPS41-210ENST00000462429 RAX2Q96IS3 184 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 ORAI2Q96SN7 254 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 PITHD1Q9GZP4 211 aaPredicted RBP5.61□□□□□ -1.51
VPS41-210ENST00000462429 TMEM168Q9H0V1 697 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 MKS1Q9NXB0 559 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 Q9UFV3 132 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 DENND2AQ9ULE3 1009 aa5.61□□□□□ -1.51
VPS41-210ENST00000462429 FFAR3O14843 346 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 OPHN1O60890 802 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 PCDH8O95206 1070 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 MT-CO1P00395 513 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 CYP1A1P04798 512 aaPredicted RBP5.6□□□□□ -1.51
VPS41-210ENST00000462429 PFKMP08237 780 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 MTHFD2P13995 350 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 POLD1P28340 1107 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 ADCY8P40145 1251 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 GPR3P46089 330 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 NEK2P51955 445 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 ZNF124Q15973 351 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 PTPN21Q16825 1174 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.6□□□□□ -1.51
VPS41-210ENST00000462429 ABCB5Q2M3G0 1257 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 TMEM200BQ69YZ2 307 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 PGM2L1Q6PCE3 622 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 ZBTB46Q86UZ6 589 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 CARFQ8N187 725 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 CDYL2Q8N8U2 506 aa5.6□□□□□ -1.51
VPS41-210ENST00000462429 LINC01356Q8N9X3 169 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms