RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 WHRNQ9P202 907 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 EMC10Q5UCC4 262 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 PURBQ96QR8 312 aaKnown RBP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 DYTNA2CJ06 578 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 KRT37O76014 449 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 POLR2MP0CAP2 368 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 MXI1P50539 228 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 TOB1P50616 345 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 ERVK-24P63145 666 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 ENPEPQ07075 957 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 NLRX1Q86UT6 975 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 FAM160B2Q86V87 743 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 FAM133AQ8N9E0 248 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 SH3GL2Q99962 352 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 MAK16Q9BXY0 300 aaKnown RBP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 MEGF6O75095 1541 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 STXBP3O00186 592 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 CYP19A1P11511 503 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 CRKLP46109 303 aaKnown RBP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 MXRA7P84157 204 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 TXNRD1Q16881 649 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 TRAPPC3LQ5T215 181 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 RC3H1Q5TC82 1133 aaKnown RBP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 PDIK1LQ8N165 341 aa7.57□□□□□ -1.2
SYNE1-216ENST00000461872 GPKOWQ92917 476 aaPredicted RBP eCLIP7.57□□□□□ -1.2
SYNE1-216ENST00000461872 ACADSP16219 412 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TMEM132AQ24JP5 1023 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 DYMQ7RTS9 669 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 CSRNP1Q96S65 589 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 LRRC1Q9BTT6 524 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 POLR3CQ9BUI4 534 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 PDP2Q9P2J9 529 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 NOL3O60936 208 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 PLCB3Q01970 1234 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 MECOMQ03112 1051 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 SRRM1Q8IYB3 904 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TMEM47Q9BQJ4 181 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TRIM4Q9C037 500 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 OLFML3Q9NRN5 406 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 NUDT17P0C025 328 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 MARSP56192 900 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 MTF1Q14872 753 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 FBXO11Q86XK2 927 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 DDX56Q9NY93 547 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 PCDHA6Q9UN73 950 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 PCDHA8Q9Y5H6 950 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 ZNF142P52746 1687 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 SASH3O75995 380 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TJP3O95049 919 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 RARGP13631 454 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 PDZD4Q76G19 769 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 RNF168Q8IYW5 571 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 NSUN4Q96CB9 384 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 C17orf75Q9HAS0 396 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 NOVA2Q9UNW9 492 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 LAMA4Q16363 1823 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 BCL9LQ86UU0 1499 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 UFL1O94874 794 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 PLEKHA8P1O95397 391 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 GTF2H1P32780 548 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 MAGOHP61326 146 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 ZNF398Q8TD17 642 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 ANO3Q9BYT9 981 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TRIM55Q9BYV6 548 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 IL1RAPL1Q9NZN1 696 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 BIN2Q9UBW5 565 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 RASSF10A6NK89 507 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 SFNP31947 248 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 KPNA2P52292 529 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 CAPRIN2Q6IMN6 1127 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TRPM8Q7Z2W7 1104 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 STAMQ92783 540 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 RNPC3Q96LT9 517 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 MAF1Q9H063 256 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TMBIM4Q9HC24 238 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TRPC6Q9Y210 931 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 EYA4O95677 639 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 PLTPP55058 493 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TNFAIP1Q13829 316 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 MCPH1Q8NEM0 835 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 CDKL2Q92772 493 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 DRC3Q9H069 523 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TCRBV5S4A2TA0A5A2 114 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 PAEPP09466 180 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 MAPTP10636 758 aaKnown RBP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 ODR4Q5SWX8 454 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 MEI1Q5TIA1 1274 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 ANKRD40Q6AI12 368 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 ZNF507Q8TCN5 953 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 TBC1D22BQ9NU19 505 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 ANAPC5Q9UJX4 755 aa7.56□□□□□ -1.2
SYNE1-216ENST00000461872 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.56□□□□□ -1.2
SYNE1-216ENST00000461872 LDHAP00338 332 aaKnown RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 DCUN1D2Q6PH85 259 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 OXER1Q8TDS5 423 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 PIGBQ92521 554 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 EPB41L4AQ9HCS5 686 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 PFDN4Q9NQP4 134 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms