RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 RFC5P40937 340 aa25.5■■□□□ 1.67
CCDC28B-203ENST00000461819 CNKSR3Q6P9H4 555 aa25.5■■□□□ 1.67
CCDC28B-203ENST00000461819 EXOC8Q8IYI6 725 aa25.5■■□□□ 1.67
CCDC28B-203ENST00000461819 NACC1Q96RE7 527 aa25.5■■□□□ 1.67
CCDC28B-203ENST00000461819 PPP1R16BQ96T49 567 aa25.5■■□□□ 1.67
CCDC28B-203ENST00000461819 CELF4Q9BZC1 486 aaKnown RBP25.5■■□□□ 1.67
CCDC28B-203ENST00000461819 BMP2KQ9NSY1 1161 aaPredicted RBP25.5■■□□□ 1.67
CCDC28B-203ENST00000461819 MICAL3Q7RTP6 2002 aa25.49■■□□□ 1.67
CCDC28B-203ENST00000461819 ZBBXA8MT70 800 aa25.49■■□□□ 1.67
CCDC28B-203ENST00000461819 GHRP10912 638 aa25.49■■□□□ 1.67
CCDC28B-203ENST00000461819 CDC25AP30304 524 aa25.49■■□□□ 1.67
CCDC28B-203ENST00000461819 PTPAQ15257 358 aa25.49■■□□□ 1.67
CCDC28B-203ENST00000461819 FOXD4L6Q3SYB3 417 aaPredicted RBP25.49■■□□□ 1.67
CCDC28B-203ENST00000461819 HABP4Q5JVS0 413 aaKnown RBP25.49■■□□□ 1.67
CCDC28B-203ENST00000461819 FOXD4L3Q6VB84 417 aaPredicted RBP25.49■■□□□ 1.67
CCDC28B-203ENST00000461819 LINC01465Q8N7H1 131 aa25.49■■□□□ 1.67
CCDC28B-203ENST00000461819 HERVK_113Q902F9 699 aa25.49■■□□□ 1.67
CCDC28B-203ENST00000461819 KDM3AQ9Y4C1 1321 aa25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 A0A087WWV3 80 aa25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 XRCC6P12956 609 aaKnown RBP eCLIP25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 MARCKSP29966 332 aaPredicted RBP25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 RARRES1P49788 294 aa25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 EMC2Q15006 297 aa25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 ZRSR1Q15695 479 aaKnown RBP25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 SEPT8Q92599 483 aa25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 AK8Q96MA6 479 aa25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 SCLT1Q96NL6 688 aa25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 DHX33Q9H6R0 707 aaKnown RBP25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 DDX19AQ9NUU7 478 aaKnown RBP25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 DAXXQ9UER7 740 aaPredicted RBP25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 KIAA1024Q9UPX6 916 aa25.48■■□□□ 1.67
CCDC28B-203ENST00000461819 IGKV6-21A0A0C4DH24 114 aa25.47■■□□□ 1.67
CCDC28B-203ENST00000461819 LONP1P36776 959 aaKnown RBP25.47■■□□□ 1.67
CCDC28B-203ENST00000461819 ANP32AP39687 249 aaKnown RBP25.47■■□□□ 1.67
CCDC28B-203ENST00000461819 LPIN1Q14693 890 aa25.47■■□□□ 1.67
CCDC28B-203ENST00000461819 STK38Q15208 465 aa25.47■■□□□ 1.67
CCDC28B-203ENST00000461819 KIZQ2M2Z5 673 aa25.47■■□□□ 1.67
CCDC28B-203ENST00000461819 FBXO47Q5MNV8 452 aa25.47■■□□□ 1.67
CCDC28B-203ENST00000461819 CDK5RAP3Q96JB5 506 aa25.47■■□□□ 1.67
CCDC28B-203ENST00000461819 IFIH1Q9BYX4 1025 aaKnown RBP25.47■■□□□ 1.67
CCDC28B-203ENST00000461819 TFIP11Q9UBB9 837 aaKnown RBP25.47■■□□□ 1.67
CCDC28B-203ENST00000461819 DBR1Q9UK59 544 aaKnown RBP25.47■■□□□ 1.67
CCDC28B-203ENST00000461819 GAS2O43903 313 aaKnown RBP25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 BRD1O95696 1058 aa25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 NASPP49321 788 aaPredicted RBP25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 DRP2Q13474 957 aa25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 ECM1Q16610 540 aa25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 PLEKHG4Q58EX7 1191 aa25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 TSHZ1Q6ZSZ6 1077 aa25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 DBF4BQ8NFT6 615 aa25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 MTRQ99707 1265 aa25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 MMTAG2Q9BU76 263 aaKnown RBP25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 OSBPL7Q9BZF2 842 aa25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 ATP6V0A4Q9HBG4 840 aa25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 SUCLA2Q9P2R7 463 aaPredicted RBP25.46■■□□□ 1.67
CCDC28B-203ENST00000461819 ARHGEF35A5YM69 484 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 RBAK-RBAKDNI3L0D1 243 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 DGAT1O75907 488 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 BAIAP3O94812 1187 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 UBA7P41226 1012 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 NLRP11P59045 1033 aaKnown RBP25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 GRIN1Q05586 938 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 MKRN4PQ13434 485 aaPredicted RBP25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 IKBKEQ14164 716 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 SLC39A14Q15043 492 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 CABP7Q86V35 215 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 ZNF710Q8N1W2 664 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 USP38Q8NB14 1042 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 TCP11Q8WWU5 503 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 OSMRQ99650 979 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 CXXC1Q9P0U4 656 aaPredicted RBP25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 SLC4A7Q9Y6M7 1214 aa25.45■■□□□ 1.66
CCDC28B-203ENST00000461819 USO1O60763 962 aaKnown RBP25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 CRYBB1P53674 252 aaPredicted RBP25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 PAK2Q13177 524 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 RASIP1Q5U651 963 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 RHPN2Q8IUC4 686 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 RASSF8Q8NHQ8 419 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 NLRP7Q8WX94 980 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 APBB2Q92870 758 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 TMEM143Q96AN5 459 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 ZNF668Q96K58 619 aaPredicted RBP25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 NT5C3AQ9H0P0 336 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 CDHR5Q9HBB8 845 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 FBXO2Q9UK22 296 aaPredicted RBP25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 DNM3Q9UQ16 869 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 SRPRBQ9Y5M8 271 aaKnown RBP25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 SQORQ9Y6N5 450 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 GBF1Q92538 1859 aa25.44■■□□□ 1.66
CCDC28B-203ENST00000461819 PTPRSQ13332 1948 aa25.43■■□□□ 1.66
CCDC28B-203ENST00000461819 EFCAB14O75071 495 aa25.43■■□□□ 1.66
CCDC28B-203ENST00000461819 GPR32O75388 356 aa25.43■■□□□ 1.66
CCDC28B-203ENST00000461819 KCNJ6P48051 423 aa25.43■■□□□ 1.66
CCDC28B-203ENST00000461819 GPC3P51654 580 aa25.43■■□□□ 1.66
CCDC28B-203ENST00000461819 TCTN1Q2MV58 587 aa25.43■■□□□ 1.66
CCDC28B-203ENST00000461819 LRIT3Q3SXY7 679 aa25.43■■□□□ 1.66
CCDC28B-203ENST00000461819 PSPC1Q8WXF1 523 aaKnown RBP25.43■■□□□ 1.66
CCDC28B-203ENST00000461819 CALML4Q96GE6 196 aa25.43■■□□□ 1.66
CCDC28B-203ENST00000461819 CSRNP2Q9H175 543 aa25.43■■□□□ 1.66
CCDC28B-203ENST00000461819 BHMT2Q9H2M3 363 aa25.43■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms