RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 DHX32Q7L7V1 743 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 HOOK3Q86VS8 718 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 NLRP8Q86W28 1048 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 CEP57L1Q8IYX8 460 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 C19orf47Q8N9M1 422 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 TMEM102Q8N9M5 508 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 SMYD1Q8NB12 490 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 KCT2Q8NC54 265 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 NAP1L3Q99457 506 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 SLC30A3Q99726 388 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 YIPF4Q9BSR8 244 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 SELENOOQ9BVL4 669 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 RTFDC1Q9BY42 306 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 ZFYVE1Q9HBF4 777 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 STK39Q9UEW8 545 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 STAP2Q9UGK3 403 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 CYP8B1Q9UNU6 501 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 ZBTB42B2RXF5 422 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 NEMFO60524 1076 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 ATP6V1G1O75348 118 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 ATE1O95260 518 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 THBS1P07996 1170 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 PCP11498 1178 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 RPL13P26373 211 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 PMLP29590 882 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 TCF7P36402 384 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 PLAURQ03405 335 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 PPP2R3AQ06190 1150 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 SP140Q13342 867 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 CRYMQ14894 314 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 OVOS1Q6IE37 1185 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 CEP68Q76N32 757 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 CPXCR1Q8N123 301 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 ESX1Q8N693 406 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 MGARPQ8TDB4 240 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 COG1Q8WTW3 980 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 KLHL6Q8WZ60 621 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 KISS1RQ969F8 398 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 EXOC4Q96A65 974 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 RBM18Q96H35 190 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 CLMNQ96JQ2 1002 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 C8orf76Q96K31 380 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 TM9SF2Q99805 663 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 ALG1Q9BT22 464 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 CRISPLD1Q9H336 500 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 DKK3Q9UBP4 350 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 DAAM1Q9Y4D1 1078 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 EME2A4GXA9 379 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 TRIM64A6NGJ6 449 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 TRIM64BA6NI03 449 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 LRRC72A6NJI9 287 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 P4HA2O15460 535 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 SART1O43290 800 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 SFTPCP11686 197 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 PRLRP16471 622 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 TNFAIP3P21580 790 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 U2AF2P26368 475 aaKnown RBP eCLIP5.31□□□□□ -1.565e-7■■■■□ 23.2
CCDC88A-209ENST00000456975 POLR2BP30876 1174 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 NF2P35240 595 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 MAGEA9P43362 315 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 PEX5P50542 639 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 CCT8P50990 548 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 KCNQ4P56696 695 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 AP2B1P63010 937 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 SMC1AQ14683 1233 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 TNIP1Q15025 636 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 PCBP1Q15365 356 aaKnown RBP eCLIP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 SYCP1Q15431 976 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 ANO1Q5XXA6 986 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 CEP135Q66GS9 1140 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 ISM2Q6H9L7 571 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 ARHGEF18Q6ZSZ5 1173 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 PNMA8AQ86V59 439 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 ERC1Q8IUD2 1116 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 SPICE1Q8N0Z3 855 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 ANKRD42Q8N9B4 389 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 USP38Q8NB14 1042 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 FAM81AQ8TBF8 368 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 TEKT4Q8WW24 435 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 TMEM40Q8WWA1 233 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 HOOK2Q96ED9 719 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 CFAP36Q96G28 342 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 RBM14Q96PK6 669 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 SLC9A7Q96T83 725 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 CDC6Q99741 560 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 CLEC4MQ9H2X3 399 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 TTC12Q9H892 705 aaPredicted RBP5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 DBNDD1Q9H9R9 158 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 ARHGEF4Q9NR80 690 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 LRRC4BQ9NT99 713 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 STK32BQ9NY57 414 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 CROTQ9UKG9 612 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 RIMKLBQ9ULI2 386 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 GTF2A1LQ9UNN4 478 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 TRIM17Q9Y577 477 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 USP6P35125 1406 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 COL24A1Q17RW2 1714 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 PAPPAQ13219 1627 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 NHSQ6T4R5 1651 aa5.31□□□□□ -1.56
CCDC88A-209ENST00000456975 WDR90Q96KV7 1748 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms