RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 TISP43B9A030 160 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 KRT13P13646 458 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 CHMP4BP1P59074 171 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 CBX1P83916 185 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 DPY19L2Q6NUT2 758 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 FBXO38Q6PIJ6 1188 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.96□□□□□ -0.01
CLK3-203ENST00000454830 EIF3CQ99613 913 aaKnown RBP14.96□□□□□ -0.01
CLK3-203ENST00000454830 SEPT11Q9NVA2 429 aaKnown RBP14.96□□□□□ -0.01
CLK3-203ENST00000454830 CLEC11AQ9Y240 323 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 RCCD1A6NED2 376 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 TGFB1I1O43294 461 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 CCNE2O96020 404 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 IREB2P48200 963 aaKnown RBP14.96□□□□□ -0.01
CLK3-203ENST00000454830 JAK3P52333 1124 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 SOX10P56693 466 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 CNTN2Q02246 1040 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 EPM2AIP1Q7L775 607 aaPredicted RBP14.96□□□□□ -0.01
CLK3-203ENST00000454830 EHBP1Q8NDI1 1231 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 KIFC3Q9BVG8 833 aa14.96□□□□□ -0.01
CLK3-203ENST00000454830 BUB1O43683 1085 aa14.96□□□□□ -0.02
CLK3-203ENST00000454830 NIPA1Q7RTP0 329 aa14.96□□□□□ -0.02
CLK3-203ENST00000454830 VSIG10LQ86VR7 867 aa14.96□□□□□ -0.02
CLK3-203ENST00000454830 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.96□□□□□ -0.02
CLK3-203ENST00000454830 GOLGA1Q92805 767 aa14.96□□□□□ -0.02
CLK3-203ENST00000454830 ZBTB9Q96C00 473 aa14.96□□□□□ -0.02
CLK3-203ENST00000454830 CLMNQ96JQ2 1002 aa14.96□□□□□ -0.02
CLK3-203ENST00000454830 MLXIPQ9HAP2 919 aa14.96□□□□□ -0.02
CLK3-203ENST00000454830 MAP3K20Q9NYL2 800 aaKnown RBP14.96□□□□□ -0.02
CLK3-203ENST00000454830 ADAMTS1Q9UHI8 967 aa14.96□□□□□ -0.02
CLK3-203ENST00000454830 PCDHA10Q9Y5I2 948 aa14.96□□□□□ -0.02
CLK3-203ENST00000454830 GOLGA8IPA6NC78 632 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 GOLGA8JA6NMD2 632 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 VAV2P52735 878 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 GJB7Q6PEY0 223 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 AFG3L2Q9Y4W6 797 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 EFCAB8A8MWE9 144 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 EIF3DO15371 548 aaKnown RBP eCLIP14.95□□□□□ -0.02
CLK3-203ENST00000454830 SRGAP2O75044 1071 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 RHOXF2BP0C7M4 288 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 KCTD17Q8N5Z5 321 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 BICD1Q96G01 975 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 RHOXF2Q9BQY4 288 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 LUC7LQ9NQ29 371 aaKnown RBP14.95□□□□□ -0.02
CLK3-203ENST00000454830 AGPAT3Q9NRZ7 376 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 CYP39A1Q9NYL5 469 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 PPP2R3BQ9Y5P8 575 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 KIF13BQ9NQT8 1826 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 TACC1O75410 805 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 TADA3O75528 432 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 ECM2O94769 699 aaPredicted RBP14.95□□□□□ -0.02
CLK3-203ENST00000454830 MOCS3O95396 460 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 RBM46Q8TBY0 533 aaKnown RBP14.95□□□□□ -0.02
CLK3-203ENST00000454830 BAP1Q92560 729 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 MYO6Q9UM54 1294 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 FHOD1Q9Y613 1164 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 SNCAIPQ9Y6H5 919 aa14.95□□□□□ -0.02
CLK3-203ENST00000454830 POLR2AP24928 1970 aaKnown RBP14.94□□□□□ -0.02
CLK3-203ENST00000454830 CTAGE15A4D2H0 777 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 CTAGE8P0CG41 777 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 PNMA6AP0CW24 399 aaPredicted RBP14.94□□□□□ -0.02
CLK3-203ENST00000454830 GUCY2CP25092 1073 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 SFNP31947 248 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 SMTNP53814 917 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 ARHGAP44Q17R89 818 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 MTERF2Q49AM1 385 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 HAUS6Q7Z4H7 955 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 CTAGE6Q86UF2 777 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 CTAGE4Q8IX94 777 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 JPH1Q9HDC5 661 aaPredicted RBP14.94□□□□□ -0.02
CLK3-203ENST00000454830 KCND2Q9NZV8 630 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 ATAD5Q96QE3 1844 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 IRF6O14896 467 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 MUTP22033 750 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 USP8P40818 1118 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 CYFIP1Q7L576 1253 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 OTUD6AQ7L8S5 288 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 CEP112Q8N8E3 955 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 MOV10L1Q9BXT6 1211 aaKnown RBP14.94□□□□□ -0.02
CLK3-203ENST00000454830 POTEB2H3BUK9 544 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 DAW1Q8N136 415 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 ATP6V0A1Q93050 837 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 ACCSQ96QU6 501 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 NUCKS1Q9H1E3 243 aaKnown RBP14.94□□□□□ -0.02
CLK3-203ENST00000454830 MYO1AQ9UBC5 1043 aa14.94□□□□□ -0.02
CLK3-203ENST00000454830 ZNF263O14978 683 aa14.93□□□□□ -0.02
CLK3-203ENST00000454830 NOL4O94818 638 aa14.93□□□□□ -0.02
CLK3-203ENST00000454830 ATP1A1P05023 1023 aaKnown RBP14.93□□□□□ -0.02
CLK3-203ENST00000454830 SERPING1P05155 500 aa14.93□□□□□ -0.02
CLK3-203ENST00000454830 UCHL3P15374 230 aa14.93□□□□□ -0.02
CLK3-203ENST00000454830 SLC35C1Q96A29 364 aa14.93□□□□□ -0.02
CLK3-203ENST00000454830 CCDC127Q96BQ5 260 aa14.93□□□□□ -0.02
CLK3-203ENST00000454830 SYT17Q9BSW7 474 aa14.93□□□□□ -0.02
CLK3-203ENST00000454830 TSGA10Q9BZW7 698 aa14.93□□□□□ -0.02
CLK3-203ENST00000454830 SLC9A2Q9UBY0 812 aa14.93□□□□□ -0.02
CLK3-203ENST00000454830 MKRN3Q13064 507 aaKnown RBP14.93□□□□□ -0.02
CLK3-203ENST00000454830 DMP1Q13316 513 aaPredicted RBP14.93□□□□□ -0.02
CLK3-203ENST00000454830 STXBP2Q15833 593 aa14.93□□□□□ -0.02
CLK3-203ENST00000454830 FOXR2Q6PJQ5 311 aa14.93□□□□□ -0.02
CLK3-203ENST00000454830 ALS2CR12Q96Q35 445 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms