RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	GABBR1	Q9UBS5	961 aa		9.82	□□□□□ -0.84
RFX3-209	ENST00000451859	PCDHA4	Q9UN74	947 aa		9.82	□□□□□ -0.84
RFX3-209	ENST00000451859	INSL6	Q9Y581	213 aa		9.82	□□□□□ -0.84
RFX3-209	ENST00000451859	TRPV2	Q9Y5S1	764 aa		9.82	□□□□□ -0.84
RFX3-209	ENST00000451859	COL4A6	Q14031	1691 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	IGKV6D-21	A0A0A0MT36	114 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	HBP1	O60381	514 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	LPXN	O60711	386 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	GAS7	O60861	476 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	CDKL5	O76039	1030 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	TDP2	O95551	362 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	PSAP	P07602	524 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	ATP4A	P20648	1035 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	SLC26A2	P50443	739 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	AK2	P54819	239 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	ERVK-21	P61565	698 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	HTRA4	P83105	476 aa	Predicted RBP	9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	KRT76	Q01546	638 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	PAK2	Q13177	524 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	LRCH2	Q5VUJ6	765 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	IER5	Q5VY09	327 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	ZNF746	Q6NUN9	644 aa	Predicted RBP	9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	TSHZ1	Q6ZSZ6	1077 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	RPAIN	Q86UA6	219 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	BLID	Q8IZY5	108 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	METTL13	Q8N6R0	699 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	NECAB1	Q8N987	351 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	TOP1MT	Q969P6	601 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	LENG9	Q96B70	501 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	EPAS1	Q99814	870 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	PRKD2	Q9BZL6	878 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	SH3GLB2	Q9NR46	395 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	GJB4	Q9NTQ9	266 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	TBC1D22B	Q9NU19	505 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	TPCN1	Q9ULQ1	816 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	PCDHA2	Q9Y5H9	948 aa		9.81	□□□□□ -0.84
RFX3-209	ENST00000451859	COL1A2	P08123	1366 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	WDR64	B1ANS9	1081 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	MSH4	O15457	936 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	EDIL3	O43854	480 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	VTN	P04004	478 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	CIITA	P33076	1130 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	KCNQ1	P51787	676 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	NFX1	Q12986	1120 aa	Known RBP	9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	UGCG	Q16739	394 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	INF2	Q27J81	1249 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	PAN2	Q504Q3	1202 aa	Known RBP	9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	ERICH6B	Q5W0A0	696 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	SMAP1	Q8IYB5	467 aa	Predicted RBP	9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	ATXN2L	Q8WWM7	1075 aa	Known RBP	9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	LINC01599	Q8WXQ3	324 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	ZNF668	Q96K58	619 aa	Predicted RBP	9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	ASB2	Q96Q27	587 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	TEKT3	Q9BXF9	490 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	CELF4	Q9BZC1	486 aa	Known RBP	9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	UNC45A	Q9H3U1	944 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	DISC1	Q9NRI5	854 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	PCDHA10	Q9Y5I2	948 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	IGSF9B	Q9UPX0	1349 aa		9.8	□□□□□ -0.84
RFX3-209	ENST00000451859	CCDC194	A0A1B0GVG4	234 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	SMIM35	A0A1B0GVV1	85 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	ZBTB42	B2RXF5	422 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	ENPP3	O14638	875 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	PFKFB2	O60825	505 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	LARGE1	O95461	756 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	C22orf31	O95567	290 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	RPLP2	P05387	115 aa	Known RBP	9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	CTNNB1	P35222	781 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	GATM	P50440	423 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	USP11	P51784	963 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	CLCN3	P51790	818 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	MRPS5	P82675	430 aa	Known RBP	9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	PRKCE	Q02156	737 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	NONO	Q15233	471 aa	Known RBP eCLIP	9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	NPY5R	Q15761	445 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	KIZ	Q2M2Z5	673 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	LETM2	Q2VYF4	491 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	EPC2	Q52LR7	807 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	ZNF484	Q5JVG2	852 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	MIER3	Q7Z3K6	550 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	TMEM192	Q8IY95	271 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	LRRC71	Q8N4P6	559 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	FIBCD1	Q8N539	461 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	ADAMTS19	Q8TE59	1207 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	BBX	Q8WY36	941 aa	Predicted RBP	9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	SYMPK	Q92797	1274 aa	Known RBP	9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	SLC5A5	Q92911	643 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	IL17RA	Q96F46	866 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	OSMR	Q99650	979 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	CDHR5	Q9HBB8	845 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	ORC3	Q9UBD5	711 aa	Predicted RBP	9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	PADI3	Q9ULW8	664 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	MAFB	Q9Y5Q3	323 aa	Predicted RBP	9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	C5orf42	Q9H799	3197 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	ADGRA3	Q8IWK6	1321 aa		9.79	□□□□□ -0.84
RFX3-209	ENST00000451859	TMEM150B	A6NC51	233 aa		9.78	□□□□□ -0.84
RFX3-209	ENST00000451859	ZNF862	O60290	1169 aa		9.78	□□□□□ -0.84
RFX3-209	ENST00000451859	RPS6KA5	O75582	802 aa		9.78	□□□□□ -0.84
RFX3-209	ENST00000451859	CTDNEP1	O95476	244 aa		9.78	□□□□□ -0.84
RFX3-209	ENST00000451859	OAT	P04181	439 aa		9.78	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms