RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 NECAB3Q96P71 396 aaPredicted RBP8□□□□□ -1.13
VPS41-208ENST00000448833 MAP7D2Q96T17 732 aa8□□□□□ -1.13
VPS41-208ENST00000448833 SLC26A6Q9BXS9 759 aa8□□□□□ -1.13
VPS41-208ENST00000448833 TM6SF1Q9BZW5 370 aa8□□□□□ -1.13
VPS41-208ENST00000448833 ELAC1Q9H777 363 aaKnown RBP8□□□□□ -1.13
VPS41-208ENST00000448833 AGO3Q9H9G7 860 aaKnown RBP8□□□□□ -1.13
VPS41-208ENST00000448833 RC3H2Q9HBD1 1191 aaKnown RBP8□□□□□ -1.13
VPS41-208ENST00000448833 RGS18Q9NS28 235 aa8□□□□□ -1.13
VPS41-208ENST00000448833 HCN4Q9Y3Q4 1203 aa8□□□□□ -1.13
VPS41-208ENST00000448833 KIAA1671Q9BY89 1806 aa8□□□□□ -1.13
VPS41-208ENST00000448833 PI4K2BG5E9Z4 385 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 DKC1O60832 514 aaKnown RBP eCLIP7.99□□□□□ -1.13
VPS41-208ENST00000448833 GAS7O60861 476 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 GPR37L1O60883 481 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 DEXIO95424 95 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 NEFLP07196 543 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 SRGAP2BP0DMP2 458 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 CD44P16070 742 aaKnown RBP7.99□□□□□ -1.13
VPS41-208ENST00000448833 SSTR3P32745 418 aaPredicted RBP7.99□□□□□ -1.13
VPS41-208ENST00000448833 TMEM62Q0P6H9 643 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 BMS1Q14692 1282 aaKnown RBP7.99□□□□□ -1.13
VPS41-208ENST00000448833 NTRK3Q16288 839 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 PKN1Q16512 942 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 CTC1Q2NKJ3 1217 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 SPOUT1Q5T280 376 aaKnown RBP7.99□□□□□ -1.13
VPS41-208ENST00000448833 RTN4RL1Q86UN2 441 aaPredicted RBP7.99□□□□□ -1.13
VPS41-208ENST00000448833 CCDC60Q8IWA6 550 aaPredicted RBP7.99□□□□□ -1.13
VPS41-208ENST00000448833 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.99□□□□□ -1.13
VPS41-208ENST00000448833 TRAPPC12Q8WVT3 735 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 PHKBQ93100 1093 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 NAP1L4Q99733 375 aaKnown RBP7.99□□□□□ -1.13
VPS41-208ENST00000448833 ADAM2Q99965 735 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 JPH2Q9BR39 696 aaPredicted RBP7.99□□□□□ -1.13
VPS41-208ENST00000448833 TEKT3Q9BXF9 490 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 OSBPL7Q9BZF2 842 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 INO80BQ9C086 356 aaPredicted RBP7.99□□□□□ -1.13
VPS41-208ENST00000448833 ATP6V0A4Q9HBG4 840 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 ZSWIM6Q9HCJ5 1215 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 ERVK-5Q9HDB9 667 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 DISC1Q9NRI5 854 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 TMEM161AQ9NX61 479 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 CLDND1Q9NY35 253 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 GABBR1Q9UBS5 961 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 PUF60Q9UHX1 559 aaKnown RBP7.99□□□□□ -1.13
VPS41-208ENST00000448833 PCDHA4Q9UN74 947 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 ST3GAL5Q9UNP4 418 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 PLAGL2Q9UPG8 496 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 GINS2Q9Y248 185 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 ATG2AQ2TAZ0 1938 aa7.99□□□□□ -1.13
VPS41-208ENST00000448833 PLXNA4Q9HCM2 1894 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 CYP3A7-CYP3A51PA0A087WV96 503 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 STK25O00506 426 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 GRM6O15303 877 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 C22orf31O95567 290 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 EOMESO95936 686 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 SKIP12755 728 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 CPA1P15085 419 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 EIF4BP23588 611 aaKnown RBP7.98□□□□□ -1.13
VPS41-208ENST00000448833 CYP3A7P24462 503 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 FAM189BP81408 668 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 ANKRD1Q15327 319 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 Q4G0T1 1027 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 LRCH2Q5VUJ6 765 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 EFCAB12Q6NXP0 572 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 MOXD1Q6UVY6 613 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 ADHFE1Q8IWW8 467 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 ABI1Q8IZP0 508 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 CDCA3Q99618 268 aaPredicted RBP7.98□□□□□ -1.13
VPS41-208ENST00000448833 DACT1Q9NYF0 836 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 NOC2LQ9Y3T9 749 aaKnown RBP7.98□□□□□ -1.13
VPS41-208ENST00000448833 MRPL42Q9Y6G3 142 aaKnown RBP7.98□□□□□ -1.13
VPS41-208ENST00000448833 C5orf42Q9H799 3197 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 MYO7AQ13402 2215 aa7.98□□□□□ -1.13
VPS41-208ENST00000448833 ZBTB42B2RXF5 422 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 C9IYK1 514 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 H3BQ06 376 aaPredicted RBP7.97□□□□□ -1.13
VPS41-208ENST00000448833 MSH4O15457 936 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 OATP04181 439 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 LINC00271P0C7V0 271 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 LAG3P18627 525 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 ATP4AP20648 1035 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 PPM1AP35813 382 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 NLRP11P59045 1033 aaKnown RBP7.97□□□□□ -1.13
VPS41-208ENST00000448833 CCT2P78371 535 aaKnown RBP7.97□□□□□ -1.13
VPS41-208ENST00000448833 KRT17Q04695 432 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 TBC1D8BQ0IIM8 1120 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 ADAM15Q13444 863 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 NONOQ15233 471 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS41-208ENST00000448833 KIZQ2M2Z5 673 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 TMEM266Q2M3C6 531 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 PAN2Q504Q3 1202 aaKnown RBP7.97□□□□□ -1.13
VPS41-208ENST00000448833 XKR3Q5GH77 459 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 KRT25Q7Z3Z0 450 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 BLIDQ8IZY5 108 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 EFHBQ8N7U6 833 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 KLHL23Q8NBE8 558 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 SPPL3Q8TCT6 385 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 MICAL1Q8TDZ2 1067 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 TBCKQ8TEA7 893 aa7.97□□□□□ -1.13
VPS41-208ENST00000448833 WASF1Q92558 559 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms