RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 INCENPQ9NQS7 918 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 PPP4R1LQ9P1A2 415 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 SLC12A8A0AV02 714 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 KATNA1O75449 491 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 INSRRP14616 1297 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 BPIP17213 487 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 SLC9A1P19634 815 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 AOAHP28039 575 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 CSF2RBP32927 897 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 USP10Q14694 798 aaKnown RBP4.86□□□□□ -1.63
VPS41-207ENST00000439468 TMEM132BQ14DG7 1078 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 DHCR24Q15392 516 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 BRDTQ58F21 947 aaPredicted RBP4.86□□□□□ -1.63
VPS41-207ENST00000439468 REXO1L1PQ8IX06 675 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 SMC1BQ8NDV3 1235 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 ERCC4Q92889 916 aaPredicted RBP4.86□□□□□ -1.63
VPS41-207ENST00000439468 SAMD11Q96NU1 681 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 LRRC37BQ96QE4 947 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 TTC1Q99614 292 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 PTPN18Q99952 460 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 TMX1Q9H3N1 280 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 HOMER2Q9NSB8 354 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 OXSMQ9NWU1 459 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 UCKL1Q9NWZ5 548 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 ZKSCAN5Q9Y2L8 839 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 WASHC2CQ9Y4E1 1318 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 PHLDB1Q86UU1 1377 aa4.86□□□□□ -1.63
VPS41-207ENST00000439468 LCHNA4D1U4 455 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 FOXP2O15409 715 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 GAS7O60861 476 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 ZNF888P0CJ79 500 aaPredicted RBP4.85□□□□□ -1.63
VPS41-207ENST00000439468 POLD1P28340 1107 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 KCNQ1P51787 676 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 GUCY2FP51841 1108 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 EPHB4P54760 987 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 HERVK_113P62684 666 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 ADAM17P78536 824 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 IL13RA1P78552 427 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 IRF9Q00978 393 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 PUM1Q14671 1186 aaKnown RBP eCLIP4.85□□□□□ -1.63
VPS41-207ENST00000439468 SART3Q15020 963 aaKnown RBP4.85□□□□□ -1.63
VPS41-207ENST00000439468 SLFN13Q68D06 897 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 OTOP1Q7RTM1 612 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 KIF18BQ86Y91 864 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 NOSTRINQ8IVI9 506 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 AJUBAQ96IF1 538 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 CARD11Q9BXL7 1154 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 DEF6Q9H4E7 631 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 IFT22Q9H7X7 185 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 KCNH7Q9NS40 1196 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 GALNT8Q9NY28 637 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 MCM8Q9UJA3 840 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 PTPN22Q9Y2R2 807 aa4.85□□□□□ -1.63
VPS41-207ENST00000439468 PRAMEF22A3QJZ6 481 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 GPR39O43194 453 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 TGM5O43548 720 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 CUTAO60888 179 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 HMGCRP04035 888 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 PDGFRBP09619 1106 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 KPNA1P52294 538 aaPredicted RBP4.84□□□□□ -1.63
VPS41-207ENST00000439468 KRTAP10-2P60368 255 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 ZXDCQ2QGD7 858 aaPredicted RBP4.84□□□□□ -1.63
VPS41-207ENST00000439468 PLEKHG6Q3KR16 790 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 KRTAP5-3Q6L8H2 238 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 ZNF585AQ6P3V2 769 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 CMIPQ8IY22 773 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 RAVER1Q8IY67 606 aaKnown RBP4.84□□□□□ -1.63
VPS41-207ENST00000439468 TTC9BQ8N6N2 239 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 GIMAP8Q8ND71 665 aaPredicted RBP4.84□□□□□ -1.63
VPS41-207ENST00000439468 GBP4Q96PP9 640 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 LMF1Q96S06 567 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 EMC7Q9NPA0 242 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 SLC5A4Q9NY91 659 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 CDC42EP3Q9UKI2 254 aa4.84□□□□□ -1.63
VPS41-207ENST00000439468 G3BP2Q9UN86 482 aaKnown RBP4.84□□□□□ -1.63
VPS41-207ENST00000439468 GPR42O15529 346 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 CNOT4O95628 575 aaKnown RBP4.83□□□□□ -1.64
VPS41-207ENST00000439468 PTX3P26022 381 aaPredicted RBP4.83□□□□□ -1.64
VPS41-207ENST00000439468 ECE1P42892 770 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 TOP3AQ13472 1001 aaPredicted RBP4.83□□□□□ -1.64
VPS41-207ENST00000439468 MTMR1Q13613 665 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 ICAM4Q14773 271 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 ATP13A4Q4VNC1 1196 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 ZMAT1Q5H9K5 638 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 LCE5AQ5TCM9 118 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 LRSAM1Q6UWE0 723 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 GGNQ86UU5 652 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 RTKN2Q8IZC4 609 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 ASB15Q8WXK1 588 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 GNRHR2Q96P88 292 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 ELF4Q99607 663 aaPredicted RBP4.83□□□□□ -1.64
VPS41-207ENST00000439468 BOCQ9BWV1 1114 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 KRTAP9-8Q9BYQ0 159 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 KRTAP9-3Q9BYQ3 159 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 KATNBL1Q9H079 304 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 BTBD7Q9P203 1132 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 KLHL42Q9P2K6 505 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 FBXO10Q9UK96 956 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 SLC4A7Q9Y6M7 1214 aa4.83□□□□□ -1.64
VPS41-207ENST00000439468 ZEB2O60315 1214 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms