RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 GKAP1Q5VSY0 366 aaPredicted RBP9.35□□□□□ -0.91
HPS4-206ENST00000439453 HGSNATQ68CP4 663 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 RGMBQ6NW40 437 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 MIGA2Q7L4E1 593 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 CACNA2D4Q7Z3S7 1137 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 CCT6BQ92526 530 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 C7orf25Q9BPX7 421 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 KDM4CQ9H3R0 1056 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 DCP1AQ9NPI6 582 aaPredicted RBP9.35□□□□□ -0.91
HPS4-206ENST00000439453 PACSIN2Q9UNF0 486 aaPredicted RBP9.35□□□□□ -0.91
HPS4-206ENST00000439453 FAM196BA6NMK8 535 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 TBC1D12O60347 775 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 GHRP10912 638 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 CALRP27797 417 aaKnown RBP9.35□□□□□ -0.91
HPS4-206ENST00000439453 EHHADHQ08426 723 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 CUL1Q13616 776 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 HPS3Q969F9 1004 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 TRIM6Q9C030 488 aaPredicted RBP9.35□□□□□ -0.91
HPS4-206ENST00000439453 TMOD2Q9NZR1 351 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.35□□□□□ -0.91
HPS4-206ENST00000439453 PPP1R12BO60237 982 aaPredicted RBP9.34□□□□□ -0.91
HPS4-206ENST00000439453 BAG3O95817 575 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 RPSAP08865 295 aaKnown RBP9.34□□□□□ -0.91
HPS4-206ENST00000439453 ELF3P78545 371 aaPredicted RBP9.34□□□□□ -0.91
HPS4-206ENST00000439453 GABPAQ06546 454 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 NAA25Q14CX7 972 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 SUPT20HL1Q3ZLR7 823 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 CPLX4Q7Z7G2 160 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 KIAA0895Q8NCT3 520 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 CSRNP1Q96S65 589 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 TMEM59LQ9UK28 342 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 PCDHA4Q9UN74 947 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 NOVA2Q9UNW9 492 aaKnown RBP9.34□□□□□ -0.91
HPS4-206ENST00000439453 CCDC194A0A1B0GVG4 234 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 ATP6V1G2O95670 118 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 KLRC1P26715 233 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 NOL9Q5SY16 702 aaKnown RBP9.34□□□□□ -0.91
HPS4-206ENST00000439453 CENPPQ6IPU0 288 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 CNNM4Q6P4Q7 775 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 CABP7Q86V35 215 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 KIRREL3Q8IZU9 778 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 NOD2Q9HC29 1040 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 SLC24A3Q9HC58 644 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 LUC7LQ9NQ29 371 aaKnown RBP9.34□□□□□ -0.91
HPS4-206ENST00000439453 ORC4O43929 436 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 CYP2D6P10635 497 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 PLCG2P16885 1265 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 DRD4P21917 467 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 COBLL1Q53SF7 1204 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 DDX42Q86XP3 938 aaKnown RBP eCLIP9.34□□□□□ -0.91
HPS4-206ENST00000439453 DHX37Q8IY37 1157 aaKnown RBP9.34□□□□□ -0.91
HPS4-206ENST00000439453 GPKOWQ92917 476 aaPredicted RBP eCLIP9.34□□□□□ -0.91
HPS4-206ENST00000439453 EDEM3Q9BZQ6 932 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 SLC39A2Q9NP94 309 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 SAP30BPQ9UHR5 308 aaKnown RBP9.34□□□□□ -0.91
HPS4-206ENST00000439453 PCDHGC5Q9Y5F6 944 aa9.34□□□□□ -0.91
HPS4-206ENST00000439453 A0A0G2JMZ2 1700 aa9.34□□□□□ -0.92
HPS4-206ENST00000439453 MGAMO43451 1857 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 ROBO3Q96MS0 1386 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 UNCXA6NJT0 531 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 MOGSQ13724 837 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 ACCSLQ4AC99 568 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 SLC9C1Q4G0N8 1177 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 UBLCP1Q8WVY7 318 aaPredicted RBP9.33□□□□□ -0.92
HPS4-206ENST00000439453 TAF4BQ92750 862 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 FBXL5Q9UKA1 691 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 NMT2O60551 498 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 SLC8A3P57103 927 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 MAGOHP61326 146 aaKnown RBP9.33□□□□□ -0.92
HPS4-206ENST00000439453 INF2Q27J81 1249 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 HIBCHQ6NVY1 386 aaPredicted RBP9.33□□□□□ -0.92
HPS4-206ENST00000439453 STAG2Q8N3U4 1231 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 CUL5Q93034 780 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 MAGOHBQ96A72 148 aaKnown RBP9.33□□□□□ -0.92
HPS4-206ENST00000439453 RSRC1Q96IZ7 334 aaKnown RBP9.33□□□□□ -0.92
HPS4-206ENST00000439453 NEUROG2Q9H2A3 272 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 NLRC4Q9NPP4 1024 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 BAIAP2L1Q9UHR4 511 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 ABCB11O95342 1321 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 MYH7BA7E2Y1 1941 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 FGFR1OPO95684 399 aaKnown RBP9.33□□□□□ -0.92
HPS4-206ENST00000439453 SERPING1P05155 500 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 MTMR3Q13615 1198 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 SFMBT2Q5VUG0 894 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 TBC1D31Q96DN5 1066 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 WNK4Q96J92 1243 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 TCP11L1Q9NUJ3 509 aa9.33□□□□□ -0.92
HPS4-206ENST00000439453 CCT8L1PA6NM43 557 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 DCDC2CA8MYV0 355 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 LAD1O00515 517 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 TLR2O60603 784 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 FGRP09769 529 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 AMPD3Q01432 767 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 PPP1R7Q15435 360 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 SPRYD7Q5W111 196 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 NAIF1Q69YI7 327 aaPredicted RBP9.32□□□□□ -0.92
HPS4-206ENST00000439453 MAB21L3Q8N8X9 362 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 HOOK2Q96ED9 719 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 MS4A4AQ96JQ5 239 aa9.32□□□□□ -0.92
HPS4-206ENST00000439453 WRNIP1Q96S55 665 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms