RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 TARSL2A2RTX5 802 aaKnown RBP11.95□□□□□ -0.5
SCN4A-201ENST00000435607 CFAP69A5D8W1 941 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 NR5A1Q13285 461 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 PDCLQ13371 301 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 KRT24Q2M2I5 525 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 NAALADL2Q58DX5 795 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 USP17L2Q6R6M4 530 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 DDX17Q92841 729 aaKnown RBP11.95□□□□□ -0.5
SCN4A-201ENST00000435607 OTULINQ96BN8 352 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 SPON2Q9BUD6 331 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 LGR6Q9HBX8 967 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 PDE8BO95263 885 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 CALB1P05937 261 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 KRT7P08729 469 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 CMA1P23946 247 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 GUCA1AP43080 201 aaPredicted RBP11.95□□□□□ -0.5
SCN4A-201ENST00000435607 ELF2Q15723 593 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 TMEM259Q4ZIN3 620 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 TBC1D9BQ66K14 1250 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 CNPY4Q8N129 248 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 RPRD1BQ9NQG5 326 aaKnown RBP11.95□□□□□ -0.5
SCN4A-201ENST00000435607 RNF14Q9UBS8 474 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 GPC3P51654 580 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 COPS2P61201 443 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 PLEKHM3Q6ZWE6 761 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 TAS2R42Q7RTR8 314 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 PGBD4Q96DM1 585 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 ZFYVE19Q96K21 471 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 AAASQ9NRG9 546 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 UBN2Q6ZU65 1347 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 A0A1B0GW55 424 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 FAM47E-STBD1D6RA91 191 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 DUX4L2P0CJ85 424 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 DUX4L3P0CJ86 424 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 DUX4L4P0CJ87 422 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 DUX4L5P0CJ88 424 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 DUX4L6P0CJ89 424 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 DUX4L7P0CJ90 424 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 LAMB3Q13751 1172 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 RBBP7Q16576 425 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 STKLD1Q8NE28 680 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 PIP4K2CQ8TBX8 421 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 RBM41Q96IZ5 413 aaKnown RBP11.95□□□□□ -0.5
SCN4A-201ENST00000435607 CNOT10Q9H9A5 744 aaKnown RBP11.95□□□□□ -0.5
SCN4A-201ENST00000435607 DUX4Q9UBX2 424 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 LMNAP02545 664 aaKnown RBP11.95□□□□□ -0.5
SCN4A-201ENST00000435607 MCF2P10911 925 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 EIF2AK2P19525 551 aaKnown RBP11.95□□□□□ -0.5
SCN4A-201ENST00000435607 ATP1A2P50993 1020 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 SNX17Q15036 470 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 PPP6R3Q5H9R7 873 aaPredicted RBP11.95□□□□□ -0.5
SCN4A-201ENST00000435607 YY1AP1Q9H869 796 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 AFF4Q9UHB7 1163 aaKnown RBP11.95□□□□□ -0.5
SCN4A-201ENST00000435607 A0A1W2PP64 1363 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 C5orf58C9J3I9 102 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 MAFGO15525 162 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 XPO4Q9C0E2 1151 aaKnown RBP11.95□□□□□ -0.5
SCN4A-201ENST00000435607 RNF181Q9P0P0 153 aa11.95□□□□□ -0.5
SCN4A-201ENST00000435607 SETD1BQ9UPS6 1966 aaKnown RBP11.94□□□□□ -0.5
SCN4A-201ENST00000435607 AP3B1O00203 1094 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 PLS3P13797 630 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 COPB1P53618 953 aaKnown RBP11.94□□□□□ -0.5
SCN4A-201ENST00000435607 PODNQ7Z5L7 613 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 RABGGTAQ92696 567 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 SMARCAD1Q9H4L7 1026 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 PCDHA5Q9Y5H7 936 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 KRT38O76015 456 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 DCAF4Q8WV16 495 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.94□□□□□ -0.5
SCN4A-201ENST00000435607 ZNF560Q96MR9 790 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 RUBCNLQ9H714 662 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 DDX56Q9NY93 547 aaKnown RBP11.94□□□□□ -0.5
SCN4A-201ENST00000435607 GTSE1Q9NYZ3 720 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 PNMA6FA0A0J9YX94 578 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 ZW10O43264 779 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 ZFXP17010 805 aaPredicted RBP11.94□□□□□ -0.5
SCN4A-201ENST00000435607 CCT5P48643 541 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 AP1B1Q10567 949 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 TBC1D10BQ4KMP7 808 aaPredicted RBP11.94□□□□□ -0.5
SCN4A-201ENST00000435607 ARHGAP15Q53QZ3 475 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 EFHC2Q5JST6 749 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 ZWILCHQ9H900 591 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 TRPC7Q9HCX4 862 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 AIPL1Q9NZN9 384 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 USP17L5A8MUK1 530 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 TNPO2O14787 897 aaKnown RBP11.94□□□□□ -0.5
SCN4A-201ENST00000435607 GRIN3BO60391 1043 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 MTMR1Q13613 665 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 HIF1AQ16665 826 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 TMEM35BQ8NCS4 154 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 SCFD1Q8WVM8 642 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 CLIC2O15247 247 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 SERPIND1P05546 499 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 APOA4P06727 396 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 TBXAS1P24557 533 aaPredicted RBP11.94□□□□□ -0.5
SCN4A-201ENST00000435607 SNCBQ16143 134 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 G2E3Q7L622 706 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 ASAP3Q8TDY4 903 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 ATG3Q9NT62 314 aa11.94□□□□□ -0.5
SCN4A-201ENST00000435607 RNF123Q5XPI4 1314 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms