RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ATP2A2P16615 1042 aaKnown RBP20.85■□□□□ 0.93
SHH-203ENST00000435425 CD52P31358 61 aa20.85■□□□□ 0.93
SHH-203ENST00000435425 CCT6AP40227 531 aaKnown RBP20.85■□□□□ 0.93
SHH-203ENST00000435425 RABGGTBP53611 331 aa20.85■□□□□ 0.93
SHH-203ENST00000435425 POLGP54098 1239 aaPredicted RBP20.85■□□□□ 0.93
SHH-203ENST00000435425 NLRP11P59045 1033 aaKnown RBP20.85■□□□□ 0.93
SHH-203ENST00000435425 WDR5P61964 334 aaKnown RBP20.85■□□□□ 0.93
SHH-203ENST00000435425 SMAD3P84022 425 aaKnown RBP20.85■□□□□ 0.93
SHH-203ENST00000435425 ATP2C1P98194 919 aaPredicted RBP20.85■□□□□ 0.93
SHH-203ENST00000435425 DRP2Q13474 957 aa20.85■□□□□ 0.93
SHH-203ENST00000435425 LINC01465Q8N7H1 131 aa20.85■□□□□ 0.93
SHH-203ENST00000435425 OSMRQ99650 979 aa20.85■□□□□ 0.93
SHH-203ENST00000435425 RAB34Q9BZG1 259 aa20.85■□□□□ 0.93
SHH-203ENST00000435425 AGO3Q9H9G7 860 aaKnown RBP20.85■□□□□ 0.93
SHH-203ENST00000435425 TUFT1Q9NNX1 390 aa20.85■□□□□ 0.93
SHH-203ENST00000435425 RANBP2P49792 3224 aaKnown RBP20.85■□□□□ 0.93
SHH-203ENST00000435425 PP2D1A8MPX8 630 aa20.84■□□□□ 0.93
SHH-203ENST00000435425 PBX2P40425 430 aa20.84■□□□□ 0.93
SHH-203ENST00000435425 PRPHP41219 470 aa20.84■□□□□ 0.93
SHH-203ENST00000435425 DNM2P50570 870 aa20.84■□□□□ 0.93
SHH-203ENST00000435425 DEFB103AP81534 67 aa20.84■□□□□ 0.93
SHH-203ENST00000435425 PDIA5Q14554 519 aa20.84■□□□□ 0.93
SHH-203ENST00000435425 SF3A1Q15459 793 aaKnown RBP20.84■□□□□ 0.93
SHH-203ENST00000435425 POTEGQ6S5H5 508 aa20.84■□□□□ 0.93
SHH-203ENST00000435425 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.84■□□□□ 0.93
SHH-203ENST00000435425 TSHZ1Q6ZSZ6 1077 aa20.84■□□□□ 0.93
SHH-203ENST00000435425 TMCO2Q7Z6W1 182 aaPredicted RBP20.84■□□□□ 0.93
SHH-203ENST00000435425 SCLT1Q96NL6 688 aa20.84■□□□□ 0.93
SHH-203ENST00000435425 POLR3CQ9BUI4 534 aaPredicted RBP20.84■□□□□ 0.93
SHH-203ENST00000435425 MYH15Q9Y2K3 1946 aa20.83■□□□□ 0.93
SHH-203ENST00000435425 VWA3AA6NCI4 1184 aa20.83■□□□□ 0.93
SHH-203ENST00000435425 LYPLA2O95372 231 aa20.83■□□□□ 0.93
SHH-203ENST00000435425 CDC25AP30304 524 aa20.83■□□□□ 0.93
SHH-203ENST00000435425 CEBPZQ03701 1054 aaKnown RBP20.83■□□□□ 0.93
SHH-203ENST00000435425 MKRN4PQ13434 485 aaPredicted RBP20.83■□□□□ 0.93
SHH-203ENST00000435425 HAUS3Q68CZ6 603 aa20.83■□□□□ 0.93
SHH-203ENST00000435425 SNX29Q8TEQ0 813 aa20.83■□□□□ 0.93
SHH-203ENST00000435425 SLC7A3Q8WY07 619 aa20.83■□□□□ 0.93
SHH-203ENST00000435425 APBB2Q92870 758 aa20.83■□□□□ 0.93
SHH-203ENST00000435425 SLC9A7Q96T83 725 aa20.83■□□□□ 0.93
SHH-203ENST00000435425 JPH2Q9BR39 696 aaPredicted RBP20.83■□□□□ 0.93
SHH-203ENST00000435425 ANKEF1Q9NU02 776 aa20.83■□□□□ 0.93
SHH-203ENST00000435425 SUCLA2Q9P2R7 463 aaPredicted RBP20.83■□□□□ 0.93
SHH-203ENST00000435425 CLIC4Q9Y696 253 aa20.83■□□□□ 0.93
SHH-203ENST00000435425 KDM3AQ9Y4C1 1321 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 IGKV6-21A0A0C4DH24 114 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 EFCAB14O75071 495 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 GPR32O75388 356 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 RPA1P27694 616 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 RFC5P40937 340 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 CRYBB1P53674 252 aaPredicted RBP20.82■□□□□ 0.92
SHH-203ENST00000435425 NFX1Q12986 1120 aaKnown RBP20.82■□□□□ 0.92
SHH-203ENST00000435425 PAK2Q13177 524 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 ZRSR1Q15695 479 aaKnown RBP20.82■□□□□ 0.92
SHH-203ENST00000435425 FAM117BQ6P1L5 589 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 RHPN2Q8IUC4 686 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 IGSF22Q8N9C0 903 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 TMEM40Q8WWA1 233 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 TMEM143Q96AN5 459 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 PBX4Q9BYU1 374 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 MSRAQ9UJ68 235 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 PADI3Q9ULW8 664 aa20.82■□□□□ 0.92
SHH-203ENST00000435425 NOC2LQ9Y3T9 749 aaKnown RBP20.82■□□□□ 0.92
SHH-203ENST00000435425 RPS6KA5O75582 802 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 AMHP03971 560 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 MYOGP15173 224 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 DNAJB2P25686 324 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 RARRES1P49788 294 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 GPC3P51654 580 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 EMC2Q15006 297 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 ECM1Q16610 540 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 KRT79Q5XKE5 535 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 Q7L0L9 218 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 KSR1Q8IVT5 923 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 EXOC8Q8IYI6 725 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 MYOCDQ8IZQ8 938 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 USP38Q8NB14 1042 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 NLRP7Q8WX94 980 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 FAM161BQ96MY7 647 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 NACC1Q96RE7 527 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 MTRQ99707 1265 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 ZBED2Q9BTP6 218 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 ADAMTS10Q9H324 1103 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 ZSCAN16Q9H4T2 348 aaPredicted RBP20.81■□□□□ 0.92
SHH-203ENST00000435425 DHX33Q9H6R0 707 aaKnown RBP20.81■□□□□ 0.92
SHH-203ENST00000435425 PPME1Q9Y570 386 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 SQORQ9Y6N5 450 aa20.81■□□□□ 0.92
SHH-203ENST00000435425 IBSPP21815 317 aaPredicted RBP20.8■□□□□ 0.92
SHH-203ENST00000435425 ARL6IP4Q66PJ3 421 aaKnown RBP20.8■□□□□ 0.92
SHH-203ENST00000435425 HERC6Q8IVU3 1022 aa20.8■□□□□ 0.92
SHH-203ENST00000435425 PHOSPHO2Q8TCD6 241 aa20.8■□□□□ 0.92
SHH-203ENST00000435425 NKX2-4Q9H2Z4 354 aa20.8■□□□□ 0.92
SHH-203ENST00000435425 DDX19AQ9NUU7 478 aaKnown RBP20.8■□□□□ 0.92
SHH-203ENST00000435425 KIAA1024Q9UPX6 916 aa20.8■□□□□ 0.92
SHH-203ENST00000435425 STK24Q9Y6E0 443 aa20.8■□□□□ 0.92
SHH-203ENST00000435425 A0A087WZ62 844 aa20.79■□□□□ 0.92
SHH-203ENST00000435425 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.79■□□□□ 0.92
SHH-203ENST00000435425 USO1O60763 962 aaKnown RBP20.79■□□□□ 0.92
SHH-203ENST00000435425 UPP2O95045 317 aa20.79■□□□□ 0.92
SHH-203ENST00000435425 BMP15O95972 392 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms