RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ITGB3BPQ13352 177 aaPredicted RBP9.16□□□□□ -0.94
CD44-208ENST00000428726 EXOC3L4Q17RC7 722 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 KNOP1Q1ED39 458 aaKnown RBP9.16□□□□□ -0.94
CD44-208ENST00000428726 TMEM63BQ5T3F8 832 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 HAUS3Q68CZ6 603 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 STYK1Q6J9G0 422 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 ZNF571Q7Z3V5 609 aaPredicted RBP9.16□□□□□ -0.94
CD44-208ENST00000428726 GPR161Q8N6U8 529 aaKnown RBP9.16□□□□□ -0.94
CD44-208ENST00000428726 FAM151AQ8WW52 585 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 RMDN3Q96TC7 470 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 FAM118BQ9BPY3 351 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 GOPCQ9HD26 462 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 TMX2Q9Y320 296 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 PCDHA2Q9Y5H9 948 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 MYH4Q9Y623 1939 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 KCNK3O14649 394 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 TGFB1I1O43294 461 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 RPA1P27694 616 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 SREBF1P36956 1147 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 MRPS9P82933 396 aaKnown RBP9.15□□□□□ -0.94
CD44-208ENST00000428726 HDLBPQ00341 1268 aaKnown RBP9.15□□□□□ -0.94
CD44-208ENST00000428726 XKR9Q5GH70 373 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 SEPT14Q6ZU15 432 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 ERMNQ8TAM6 284 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 NT5C3AQ9H0P0 336 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 TAOK3Q9H2K8 898 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 RBM12Q9NTZ6 932 aaKnown RBP9.15□□□□□ -0.94
CD44-208ENST00000428726 NFKBIEO00221 500 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 FGFR1OPO95684 399 aaKnown RBP9.15□□□□□ -0.94
CD44-208ENST00000428726 GJC1P36383 396 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 KRT83P78385 493 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 CNTN2Q02246 1040 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 MAP2K1Q02750 393 aaPredicted RBP9.15□□□□□ -0.94
CD44-208ENST00000428726 HGSNATQ68CP4 663 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 PDXDC1Q6P996 788 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 SND1Q7KZF4 910 aaKnown RBP eCLIP9.15□□□□□ -0.94
CD44-208ENST00000428726 DHX38Q92620 1227 aaKnown RBP9.15□□□□□ -0.94
CD44-208ENST00000428726 MKL1Q969V6 931 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 IQCDQ96DY2 449 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 KRT12Q99456 494 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 FAM53CQ9NYF3 392 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 PIM2Q9P1W9 311 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 PLAGL2Q9UPG8 496 aa9.15□□□□□ -0.94
CD44-208ENST00000428726 BACH1O14867 736 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 UCHL3P15374 230 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 USP11P51784 963 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 VAV2P52735 878 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 TUBB4BP68371 445 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 PSMD2Q13200 908 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 SPDYE2Q495Y8 402 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 PADI6Q6TGC4 694 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 FAM186BQ8IYM0 893 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 CEP112Q8N8E3 955 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 SLC20A1Q8WUM9 679 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 RABGGTAQ92696 567 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 CALCOCO1Q9P1Z2 691 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 ASTN1O14525 1302 aa9.15□□□□□ -0.95
CD44-208ENST00000428726 CEP104O60308 925 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 DDNO94850 711 aaPredicted RBP9.14□□□□□ -0.95
CD44-208ENST00000428726 VIL1P09327 827 aaKnown RBP9.14□□□□□ -0.95
CD44-208ENST00000428726 VCAM1P19320 739 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 PON1P27169 355 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 OSTNP61366 133 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 MTMR1Q13613 665 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 TTLL12Q14166 644 aaPredicted RBP9.14□□□□□ -0.95
CD44-208ENST00000428726 ASIC2Q16515 512 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 SLC9C1Q4G0N8 1177 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 DALRD3Q5D0E6 543 aaKnown RBP9.14□□□□□ -0.95
CD44-208ENST00000428726 FIGNQ5HY92 759 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 ARHGEF16Q5VV41 709 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 SNRNP48Q6IEG0 339 aaKnown RBP9.14□□□□□ -0.95
CD44-208ENST00000428726 SLFN12Q8IYM2 578 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 SYT2Q8N9I0 419 aaPredicted RBP9.14□□□□□ -0.95
CD44-208ENST00000428726 SLC30A5Q8TAD4 765 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 ERGIC2Q96RQ1 377 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 COL11A2P13942 1736 aaPredicted RBP9.14□□□□□ -0.95
CD44-208ENST00000428726 UNC80Q8N2C7 3258 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 CYP3A7-CYP3A51PA0A087WV96 503 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 SMIM23A6NLE4 172 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 TACC1O75410 805 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 AMPD2Q01433 879 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 CASP8Q14790 479 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 MEA1Q16626 185 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 ZCWPW2Q504Y3 356 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 TRIM59Q8IWR1 403 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 SH2D3CQ8N5H7 860 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 ZNF526Q8TF50 670 aaPredicted RBP9.14□□□□□ -0.95
CD44-208ENST00000428726 CHURC1Q8WUH1 139 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 TMOD4Q9NZQ9 345 aa9.14□□□□□ -0.95
CD44-208ENST00000428726 KDM3AQ9Y4C1 1321 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 SLC26A4O43511 780 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 GJB1P08034 283 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 FAM153BP0C7A2 387 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 ITGA4P13612 1032 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 LRRC63Q05C16 580 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 FAM153CQ494X1 144 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 MTERF2Q49AM1 385 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 IQCEQ6IPM2 695 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 SWSAP1Q6NVH7 229 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 FOXR2Q6PJQ5 311 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms