RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 VCAM1P19320 739 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 KLHDC7AQ5VTJ3 777 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 IQCEQ6IPM2 695 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 DDX42Q86XP3 938 aaKnown RBP eCLIP13.05□□□□□ -0.32
PTPRN-204ENST00000423636 SUPT20HQ8NEM7 779 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 FAM20AQ96MK3 541 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 TLR10Q9BXR5 811 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 KCNK3O14649 394 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 FOSP01100 380 aaPredicted RBP13.05□□□□□ -0.32
PTPRN-204ENST00000423636 EPB41P11171 864 aaKnown RBP13.05□□□□□ -0.32
PTPRN-204ENST00000423636 MTMR1Q13613 665 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 FAM182AQ5T1J6 154 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 DAW1Q8N136 415 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 SLC35C1Q96A29 364 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 ZBTB10Q96DT7 871 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 LRRC27Q9C0I9 530 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 PLCB1Q9NQ66 1216 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 MRPL11Q9Y3B7 192 aaKnown RBP13.05□□□□□ -0.32
PTPRN-204ENST00000423636 MYO3BQ8WXR4 1341 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 LRRC37AA6NMS7 1700 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 ASNSP08243 561 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 WHAMMP3Q1A5X7 153 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 DALRD3Q5D0E6 543 aaKnown RBP13.05□□□□□ -0.32
PTPRN-204ENST00000423636 MOB2Q70IA6 237 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 SND1Q7KZF4 910 aaKnown RBP eCLIP13.05□□□□□ -0.32
PTPRN-204ENST00000423636 CCDC170Q8IYT3 715 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 KRT12Q99456 494 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 TEKT3Q9BXF9 490 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 SNX12Q9UMY4 172 aa13.05□□□□□ -0.32
PTPRN-204ENST00000423636 BACH1O14867 736 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 ZBTB22O15209 634 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 ZNF211Q13398 564 aaPredicted RBP13.04□□□□□ -0.32
PTPRN-204ENST00000423636 XKR9Q5GH70 373 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 RETREG2Q8NC44 543 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 TRPM4Q8TD43 1214 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 PPP1R13LQ8WUF5 828 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 PI4K2AQ9BTU6 479 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 CENPHQ9H3R5 247 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 CEP72Q9P209 647 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 DLATP10515 647 aaKnown RBP13.04□□□□□ -0.32
PTPRN-204ENST00000423636 MAPK8IP2Q13387 824 aaPredicted RBP13.04□□□□□ -0.32
PTPRN-204ENST00000423636 HYIQ5T013 277 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 ARHGEF16Q5VV41 709 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 KCTD16Q68DU8 428 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 SPATA4Q8NEY3 305 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 SLC20A1Q8WUM9 679 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 GTPBP4Q9BZE4 634 aaKnown RBP13.04□□□□□ -0.32
PTPRN-204ENST00000423636 GANQ9H2C0 597 aa13.04□□□□□ -0.32
PTPRN-204ENST00000423636 RANBP17Q9H2T7 1088 aaKnown RBP13.04□□□□□ -0.32
PTPRN-204ENST00000423636 MAP2K1Q02750 393 aaPredicted RBP13.03□□□□□ -0.32
PTPRN-204ENST00000423636 WDR78Q5VTH9 848 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 SCARA3Q6AZY7 606 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 TMEM130Q8N3G9 435 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 SYTL5Q8TDW5 730 aaPredicted RBP13.03□□□□□ -0.32
PTPRN-204ENST00000423636 CLEC4DQ8WXI8 215 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 BTBD6Q96KE9 485 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 ZMYM2Q9UBW7 1377 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 FOCADQ5VW36 1801 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 PHF20L1A8MW92 1017 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 CALUO43852 315 aaPredicted RBP13.03□□□□□ -0.32
PTPRN-204ENST00000423636 CEP104O60308 925 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 USP14P54578 494 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 TKFCQ3LXA3 575 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 SNRNP48Q6IEG0 339 aaKnown RBP13.03□□□□□ -0.32
PTPRN-204ENST00000423636 ALKBH5Q6P6C2 394 aaKnown RBP13.03□□□□□ -0.32
PTPRN-204ENST00000423636 BTNL9Q6UXG8 535 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 NOX5Q96PH1 765 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 PPP1R16BQ96T49 567 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 MXRA8Q9BRK3 442 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 DNAJC12Q9UKB3 198 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 L1RE1Q9UN81 338 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 CCDC151A5D8V7 595 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 BAG6P46379 1132 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 DRAP1Q14919 205 aaPredicted RBP13.03□□□□□ -0.32
PTPRN-204ENST00000423636 DAB2IPQ5VWQ8 1189 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 ZNF720Q7Z2F6 126 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 MBOAT7Q96N66 472 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 MYO1AQ9UBC5 1043 aa13.03□□□□□ -0.32
PTPRN-204ENST00000423636 ATRNL1Q5VV63 1379 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 EVI5O60447 810 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 CCNE2O96020 404 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 SERPING1P05155 500 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 FAM153BP0C7A2 387 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 GUCY2DQ02846 1103 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 FAM153CQ494X1 144 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 LLGL2Q6P1M3 1020 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 FOXR1Q6PIV2 292 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 IRF2BP2Q7Z5L9 587 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 PRPF38AQ8NAV1 312 aaKnown RBP13.02□□□□□ -0.32
PTPRN-204ENST00000423636 ALS2CR12Q96Q35 445 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 UBE2TQ9NPD8 197 aaPredicted RBP13.02□□□□□ -0.32
PTPRN-204ENST00000423636 AGPAT3Q9NRZ7 376 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 TYW1Q9NV66 732 aaKnown RBP13.02□□□□□ -0.32
PTPRN-204ENST00000423636 FAM153AQ9UHL3 310 aa13.02□□□□□ -0.32
PTPRN-204ENST00000423636 MYH11P35749 1972 aa13.02□□□□□ -0.33
PTPRN-204ENST00000423636 GLI1P08151 1106 aa13.02□□□□□ -0.33
PTPRN-204ENST00000423636 ASTE1Q2TB18 679 aaPredicted RBP13.02□□□□□ -0.33
PTPRN-204ENST00000423636 PAPD7Q5XG87 772 aaKnown RBP13.02□□□□□ -0.33
PTPRN-204ENST00000423636 RNF207Q6ZRF8 634 aa13.02□□□□□ -0.33
PTPRN-204ENST00000423636 TRIM58Q8NG06 486 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms