RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 MAPK8IP1Q9UQF2 711 aa18.96■□□□□ 0.63
CCDC28B-202ENST00000421922 BICDL2A1A5D9 508 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 RSPH10B2B2RC85 870 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 IKBKBO14920 756 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 RSPH10BP0C881 870 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 ELNP15502 786 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 PTGS1P23219 599 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 RFC5P40937 340 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 PRCPP42785 496 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 PLCB2Q00722 1185 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 STK4Q13043 487 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 MYOCDQ8IZQ8 938 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 ADSSL1Q8N142 457 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 NELFBQ8WX92 580 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 KIFAP3Q92845 792 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 HPS3Q969F9 1004 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 DHTKD1Q96HY7 919 aaPredicted RBP18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 NIFKQ9BYG3 293 aaKnown RBP18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 MCOLN1Q9GZU1 580 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 PCDH10Q9P2E7 1040 aa18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 LARSQ9P2J5 1176 aaKnown RBP18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 GNEQ9Y223 722 aaKnown RBP18.95■□□□□ 0.62
CCDC28B-202ENST00000421922 PPP1R3GB7ZBB8 358 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 HBP1O60381 514 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 STBD1O95210 358 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 IGHA2P01877 340 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 ZNF286BP0CG31 522 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 PRKAR2AP13861 404 aaKnown RBP18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 CD44P16070 742 aaKnown RBP18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 ATP4AP20648 1035 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 STX17P56962 302 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 EHHADHQ08426 723 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 EMC2Q15006 297 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 IQCB1Q15051 598 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 PLCB4Q15147 1175 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 COBLL1Q53SF7 1204 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 ODR4Q5SWX8 454 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 DHX40Q8IX18 779 aaKnown RBP18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 FAM178BQ8IXR5 827 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 KIAA0895Q8NCT3 520 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 TSG101Q99816 390 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 JPH2Q9BR39 696 aaPredicted RBP18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 RWDD2AQ9UIY3 292 aa18.94■□□□□ 0.62
CCDC28B-202ENST00000421922 ADCY6O43306 1168 aa18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 DUSP11O75319 330 aaKnown RBP18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 GCNT3O95395 438 aa18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 RARBP10826 455 aa18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 TBC1D8BQ0IIM8 1120 aa18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 GUF1Q8N442 669 aaKnown RBP18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 SLAIN1Q8ND83 568 aa18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 ENOX1Q8TC92 643 aaKnown RBP18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 LENG1Q96BZ8 264 aaPredicted RBP18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 OLFML3Q9NRN5 406 aa18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 TRIM17Q9Y577 477 aa18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 KAT6AQ92794 2004 aa18.93■□□□□ 0.62
CCDC28B-202ENST00000421922 A6NJR5 290 aa18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 SFI1A8K8P3 1242 aa18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 SEPT4O43236 478 aa18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 ZNF131P52739 623 aa18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 CAP1Q01518 475 aa18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 CACNB2Q08289 660 aaPredicted RBP18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 DMP1Q13316 513 aaPredicted RBP18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 SLC17A8Q8NDX2 589 aa18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 PXYLP1Q8TE99 480 aa18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 IFT74Q96LB3 600 aa18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 POLD4Q9HCU8 107 aa18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 UBE4BO95155 1302 aa18.92■□□□□ 0.62
CCDC28B-202ENST00000421922 H3BRB1 525 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 K7ENM7 598 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 GAS2O43903 313 aaKnown RBP18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 ZEB2O60315 1214 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 MYL3P08590 195 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 C6orf222P0C671 652 aaPredicted RBP18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 HOXD8P13378 290 aaPredicted RBP18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 PLS3P13797 630 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 CCNE1P24864 410 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 SMTNP53814 917 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 CHMP4BP1P59074 171 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 ALCAMQ13740 583 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 LRRC41Q15345 812 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 FSCN1Q16658 493 aaKnown RBP18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 ZNF484Q5JVG2 852 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 SPATA1Q5VX52 437 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 TRPV1Q8NER1 839 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 P2RX5Q93086 422 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 TUT1Q9H6E5 874 aaKnown RBP18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 C17orf75Q9HAS0 396 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 KCNG1Q9UIX4 513 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 NFE2L3Q9Y4A8 694 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 TNRC18O15417 2968 aaPredicted RBP18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 PDE4DIPQ5VU43 2346 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 COL1A2P08123 1366 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 TRIM32Q13049 653 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 MAPK7Q13164 816 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 TCP11Q8WWU5 503 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 KATNAL1Q9BW62 490 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 POLR3FQ9H1D9 316 aaPredicted RBP18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 DHX33Q9H6R0 707 aaKnown RBP18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 PCDHB13Q9Y5F0 798 aa18.91■□□□□ 0.62
CCDC28B-202ENST00000421922 CCDC169A6NNP5 214 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms