RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 IFNAR1P17181 557 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 CIITAP33076 1130 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 NRIP1P48552 1158 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 CRYBB1P53674 252 aaPredicted RBP13.09□□□□□ -0.31
USP4-204ENST00000416417 NLRP11P59045 1033 aaKnown RBP13.09□□□□□ -0.31
USP4-204ENST00000416417 NLRP5P59047 1200 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 ADAM15Q13444 863 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 PUS10Q3MIT2 529 aaKnown RBP13.09□□□□□ -0.31
USP4-204ENST00000416417 EFCAB12Q6NXP0 572 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 P2RX5Q93086 422 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 FAM122AQ96E09 287 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 SH2D3AQ9BRG2 576 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 RNF26Q9BY78 433 aaPredicted RBP13.09□□□□□ -0.31
USP4-204ENST00000416417 UPF3BQ9BZI7 483 aaKnown RBP13.09□□□□□ -0.31
USP4-204ENST00000416417 UNC45AQ9H3U1 944 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 RGS18Q9NS28 235 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 TYW1Q9NV66 732 aaKnown RBP13.09□□□□□ -0.31
USP4-204ENST00000416417 PER2O15055 1255 aa13.08□□□□□ -0.31
USP4-204ENST00000416417 GPR182O15218 404 aa13.08□□□□□ -0.31
USP4-204ENST00000416417 CSDE1O75534 798 aaKnown RBP13.08□□□□□ -0.31
USP4-204ENST00000416417 TDP2O95551 362 aa13.08□□□□□ -0.31
USP4-204ENST00000416417 PSMA5P28066 241 aa13.08□□□□□ -0.31
USP4-204ENST00000416417 PLA2G5P39877 138 aa13.08□□□□□ -0.31
USP4-204ENST00000416417 PBX3P40426 434 aa13.08□□□□□ -0.31
USP4-204ENST00000416417 NDUFV1P49821 464 aa13.08□□□□□ -0.31
USP4-204ENST00000416417 PRKCEQ02156 737 aa13.08□□□□□ -0.31
USP4-204ENST00000416417 RUFY3Q7L099 469 aa13.08□□□□□ -0.31
USP4-204ENST00000416417 SMAP1Q8IYB5 467 aaPredicted RBP13.08□□□□□ -0.31
USP4-204ENST00000416417 TBCKQ8TEA7 893 aa13.08□□□□□ -0.31
USP4-204ENST00000416417 DISC1Q9NRI5 854 aa13.08□□□□□ -0.31
USP4-204ENST00000416417 BARX2Q9UMQ3 279 aaPredicted RBP13.08□□□□□ -0.31
USP4-204ENST00000416417 WDR64B1ANS9 1081 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 GAS7O60861 476 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 GLP2RO95838 553 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 OATP04181 439 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 SSRP1Q08945 709 aaKnown RBP13.08□□□□□ -0.32
USP4-204ENST00000416417 DRP2Q13474 957 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 DSC3Q14574 896 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 SLC24A5Q71RS6 500 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 ADHFE1Q8IWW8 467 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 FBXL16Q8N461 479 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 RNF169Q8NCN4 708 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 CCDC148Q8NFR7 591 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 BICD2Q8TD16 824 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 MICAL1Q8TDZ2 1067 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 EVPLQ92817 2033 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 ADAMTS10Q9H324 1103 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 ZSWIM6Q9HCJ5 1215 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 RNF19AQ9NV58 838 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 CLEC1BQ9P126 229 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 CD207Q9UJ71 328 aa13.08□□□□□ -0.32
USP4-204ENST00000416417 PLXNA4Q9HCM2 1894 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 C19orf67A6NJJ6 358 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 REC8O95072 547 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 ERVFC1P60507 584 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 SMAD2Q15796 467 aaKnown RBP13.07□□□□□ -0.32
USP4-204ENST00000416417 LRCH2Q5VUJ6 765 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 MCTP2Q6DN12 878 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 THNSL1Q8IYQ7 743 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 LINC01465Q8N7H1 131 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 COLGALT1Q8NBJ5 622 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 SLC5A5Q92911 643 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 TEKT3Q9BXF9 490 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 CWH43Q9H720 699 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 ATP6V0A4Q9HBG4 840 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 C1orf112Q9NSG2 853 aa13.07□□□□□ -0.32
USP4-204ENST00000416417 DCXO43602 365 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 NCK2O43639 380 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 FGF18O76093 207 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 EVCP57679 992 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 MTERF2Q49AM1 385 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 NAALADL2Q58DX5 795 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 LRRC55Q6ZSA7 311 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 MIER3Q7Z3K6 550 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 VN1R2Q8NFZ6 395 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 MSLNLQ96KJ4 702 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 SCLT1Q96NL6 688 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 CASD1Q96PB1 797 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 MAP7D2Q96T17 732 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 TLE6Q9H808 572 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 NRBP2Q9NSY0 501 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 GJB4Q9NTQ9 266 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 TMEM161AQ9NX61 479 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 MUTYHQ9UIF7 546 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 PCDHA4Q9UN74 947 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 KCNJ14Q9UNX9 436 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 FAM50BQ9Y247 325 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 HCN4Q9Y3Q4 1203 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 PCDHB12Q9Y5F1 795 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 CYP46A1Q9Y6A2 500 aa13.06□□□□□ -0.32
USP4-204ENST00000416417 MAGEB2O15479 319 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 PSMD10O75832 226 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 GPC3P51654 580 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 USP11P51784 963 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 FAM189BP81408 668 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 SMAD4Q13485 552 aaKnown RBP13.05□□□□□ -0.32
USP4-204ENST00000416417 NPY5RQ15761 445 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 LONRF3Q496Y0 759 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 PLPP4Q5VZY2 271 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 TRIM22Q8IYM9 498 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms